Gene detail information of Glyur004069s00045906 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G41560.1 | 2.00E-09 | autoinhibited Ca(2+)-ATPase, isoform 4 |
| NR | AAL73984.1 | 5.84E-22 | type IIB calcium ATPase [Medicago truncatula] |
| Swissprot | tr|O22218|ACA4_ARATH | 7.00E-11 | Calcium-transporting ATPase 4, plasma membrane-type |
| trEMBL | tr|Q8W0V0|Q8W0V0_MEDTR | 2.00E-22 | Calcium-transporting ATPase {ECO:0000256|RuleBase:RU361146} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04069 | 3594 | 9394 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.801 |
| SRR1783600 | control | 0.664 |
| SRR1783602 | moderate drought stress | 0.518 |
| SRR1811619 | moderate drought stress | 0.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 62.997 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 51.940 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 48.526 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 44.344 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 141.247 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 118.303 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.353 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 63.498 |
| SRR2868004 | Drought Stress (root) | 40.413 |
| SRR2967015 | Control (root) | 37.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.125 |
| SRR9715740 | Leaf | 13.212 |
| SRR9715741 | Leaf | 0.105 |
| SRR9715739 | Root | 7.633 |
| SRR9715742 | Root | 0.192 |
| SRR9715743 | Root | 1.682 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 61.776 |
| SRR8749028 | MeJA induced 9h | 19.479 |
| SRR8749029 | MeJA induced 9h | 54.559 |
| SRR8749030 | Uninduced | 10.370 |
| SRR8749031 | Uninduced | 9.943 |
| SRR8749032 | Uninduced | 16.017 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.412 |
| SRR8400027 | Control - Root | 15.299 |