Gene detail information of Glyur004066s00042567 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G06000.2 | 5.00E-135 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004488085.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g06000-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9ZUE9|PP149_ARATH | 5.00E-163 | Pentatricopeptide repeat-containing protein At2g06000 |
| trEMBL | tr|A0A072V891|A0A072V891_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:KEH37588.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04066 | 15396 | 17075 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004066s00042567.1 | PF01535.15 | PPR | 121 | 146 | 0.52 |
| Glyur004066s00042567.1 | PF01535.15 | PPR | 190 | 217 | 1 |
| Glyur004066s00042567.1 | PF13041.1 | PPR_2 | 224 | 271 | 6.50E-14 |
| Glyur004066s00042567.1 | PF13041.1 | PPR_2 | 293 | 341 | 2.60E-17 |
| Glyur004066s00042567.1 | PF13041.1 | PPR_2 | 364 | 412 | 1.20E-13 |
| Glyur004066s00042567.1 | PF13041.1 | PPR_2 | 436 | 481 | 2.30E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.541 |
| SRR1783600 | control | 2.536 |
| SRR1783602 | moderate drought stress | 2.005 |
| SRR1811619 | moderate drought stress | 2.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.150 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.955 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.645 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.732 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.294 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.174 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.239 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.662 |
| SRR2868004 | Drought Stress (root) | 4.005 |
| SRR2967015 | Control (root) | 4.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.235 |
| SRR9715740 | Leaf | 1.976 |
| SRR9715741 | Leaf | 2.088 |
| SRR9715739 | Root | 2.166 |
| SRR9715742 | Root | 3.911 |
| SRR9715743 | Root | 3.781 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.768 |
| SRR8749028 | MeJA induced 9h | 1.664 |
| SRR8749029 | MeJA induced 9h | 0.628 |
| SRR8749030 | Uninduced | 0.383 |
| SRR8749031 | Uninduced | 0.137 |
| SRR8749032 | Uninduced | 0.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.058 |
| SRR8400027 | Control - Root | 4.215 |