Gene detail information of Glyur004057s00042106 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40280.1 | 0 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| NR | KHN04781.1 | 0 | Putative methyltransferase PMT23 [Glycine soja] |
| Swissprot | tr|Q9SIZ3|PMTN_ARATH | 0 | Probable methyltransferase PMT23 |
| trEMBL | tr|I1LMU2|I1LMU2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G35590.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04057 | 3144 | 8344 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004057s00042106.1 | PF03141.11 | Methyltransf_29 | 302 | 583 | 1.10E-102 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.751 |
| SRR1783600 | control | 3.824 |
| SRR1783602 | moderate drought stress | 3.294 |
| SRR1811619 | moderate drought stress | 3.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.439 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.438 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.921 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.938 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.699 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.625 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.738 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.551 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.460 |
| SRR2868004 | Drought Stress (root) | 3.963 |
| SRR2967015 | Control (root) | 3.713 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.242 |
| SRR9715740 | Leaf | 2.946 |
| SRR9715741 | Leaf | 0.393 |
| SRR9715739 | Root | 1.528 |
| SRR9715742 | Root | 2.382 |
| SRR9715743 | Root | 2.225 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.111 |
| SRR8749028 | MeJA induced 9h | 0.246 |
| SRR8749029 | MeJA induced 9h | 0.163 |
| SRR8749030 | Uninduced | 0.137 |
| SRR8749031 | Uninduced | 0.154 |
| SRR8749032 | Uninduced | 0.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.173 |
| SRR8400027 | Control - Root | 5.670 |