Gene detail information of Glyur004037s00039973 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G14420.4 | 8.00E-149 | RING domain ligase2 |
| NR | KEH20743.1 | 0 | E3 ubiquitin-protein ligase RGLG2-like protein [Medicago truncatula] |
| Swissprot | tr|Q9LY87|RGLG2_ARATH | 0 | E3 ubiquitin-protein ligase RGLG2 |
| trEMBL | tr|A0A072TV45|A0A072TV45_MEDTR | 0 | E3 ubiquitin-protein ligase RGLG2-like protein {ECO:0000313|EMBL:KEH20743.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04037 | 1596 | 5957 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004037s00039973.1 | PF07002.11 | Copine | 155 | 303 | 2.20E-52 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.064 |
| SRR1783600 | control | 1.989 |
| SRR1783602 | moderate drought stress | 2.329 |
| SRR1811619 | moderate drought stress | 2.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.784 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.768 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.292 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.113 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.280 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.083 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.621 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.557 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.516 |
| SRR2868004 | Drought Stress (root) | 31.681 |
| SRR2967015 | Control (root) | 19.945 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.711 |
| SRR9715740 | Leaf | 3.579 |
| SRR9715741 | Leaf | 22.199 |
| SRR9715739 | Root | 0.895 |
| SRR9715742 | Root | 4.636 |
| SRR9715743 | Root | 2.683 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.537 |
| SRR8749028 | MeJA induced 9h | 22.336 |
| SRR8749029 | MeJA induced 9h | 14.173 |
| SRR8749030 | Uninduced | 25.222 |
| SRR8749031 | Uninduced | 39.073 |
| SRR8749032 | Uninduced | 12.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.428 |
| SRR8400027 | Control - Root | 5.750 |