Gene detail information of Glyur004036s00042048 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00350.1 | 3.00E-34 | MATE efflux family protein |
| NR | XP_003548166.1 | 1.54E-60 | PREDICTED: protein TRANSPARENT TESTA 12-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9LYT3|TT12_ARATH | 3.00E-31 | Protein TRANSPARENT TESTA 12 |
| trEMBL | tr|I1MPJ8|I1MPJ8_SOYBN | 6.00E-61 | MATE efflux family protein {ECO:0000256|RuleBase:RU004914} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04036 | 7557 | 11534 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004036s00042048.1 | PF01554.13 | MatE | 105 | 161 | 9.50E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.257 |
| SRR1783600 | control | 7.292 |
| SRR1783602 | moderate drought stress | 7.991 |
| SRR1811619 | moderate drought stress | 7.829 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.108 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.956 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.039 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.883 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.001 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.047 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.178 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.983 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.952 |
| SRR2868004 | Drought Stress (root) | 13.868 |
| SRR2967015 | Control (root) | 14.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.239 |
| SRR9715740 | Leaf | 7.715 |
| SRR9715741 | Leaf | 4.271 |
| SRR9715739 | Root | 3.886 |
| SRR9715742 | Root | 4.036 |
| SRR9715743 | Root | 3.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.914 |
| SRR8400027 | Control - Root | 20.535 |