Gene detail information of Glyur004036s00042047.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G25630.1 | 4.00E-59 | fibrillarin 2 |
| NR | KHN31260.1 | 1.16E-79 | rRNA 2'-O-methyltransferase fibrillarin 2 [Glycine soja] |
| COG | YP_001012254.1 | 5.00E-29 | fibrillarin [Hyperthermus butylicus DSM 5456] |
| Swissprot | tr|Q94AH9|MD36A_ARATH | 1.00E-72 | Mediator of RNA polymerase II transcription subunit 36a |
| trEMBL | tr|I1MYV4|I1MYV4_SOYBN | 4.00E-80 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G02340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04036 | 175 | 6522 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K14563 | NOP1, FBL | EC:2.1.1.- | Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004036s00042047.1 | PF01269.12 | Fibrillarin | 1 | 112 | 1.60E-51 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 71.504 |
| SRR1783600 | control | 72.773 |
| SRR1783602 | moderate drought stress | 104.767 |
| SRR1811619 | moderate drought stress | 103.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 125.939 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 129.930 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 59.120 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 59.210 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 114.415 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 116.445 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.683 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 33.218 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 143.092 |
| SRR2868004 | Drought Stress (root) | 91.705 |
| SRR2967015 | Control (root) | 97.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 58.121 |
| SRR9715740 | Leaf | 60.202 |
| SRR9715741 | Leaf | 62.191 |
| SRR9715739 | Root | 144.544 |
| SRR9715742 | Root | 144.652 |
| SRR9715743 | Root | 150.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 186.229 |
| SRR8749028 | MeJA induced 9h | 57.711 |
| SRR8749029 | MeJA induced 9h | 99.031 |
| SRR8749030 | Uninduced | 11.874 |
| SRR8749031 | Uninduced | 9.955 |
| SRR8749032 | Uninduced | 33.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 126.439 |
| SRR8400027 | Control - Root | 93.270 |