Gene detail

Gene detail information of Glyur004034s00034235

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G27960.1	0	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_007151047.1	0	hypothetical protein PHAVU_004G014000g [Phaseolus vulgaris]
COG	YP_004385194.1	8.00E-32	TPR-repeat-containing protein [Methanosaeta concilii GP6]
trEMBL	tr\|D2DWB2\|D2DWB2_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW23041.1}

Sequence

Transcript Sequence

>Glyur004034s00034235.1
ATGCGGAGCTCTGATCAATCACCCTCCAGGACTAGTTTTTACTCATATGGTGAAGAGTCAAGGATAGATTCAGAGTTGTGCCACCTTGTTGGAGATCTTGTGGATTTGGAGATTACAAAGAAGGTGGTTGCTGAGGCTAAAGAGAACTACAAAACCAATGCTAGCAGTGAGAAAGATATTGTGTCATGTGGCAAGGAACCTACTACAAAGAAGGATAATGACCAATCACCAAGCTCAACAAGGGTCATTGAAGGATCAACCAAGTCAACCCCCAAAAGCAGAAAGAGGAATGAGAAGGGAACGAGAAAAGGAAATGGTCTTTACAATATGAGGAAGCATAGGAGCCTTGGTTTGAAGGGGATTGAGGATTGTGTTGCTGCTGGGTTGGATGAATCTGACCTGGGACCACTTTTGCTCAAGCGAACAAGAGACATGATCTCCTCGGGTGGGAATCCACAGAAAGCTCTTGATTTGGCTCTTAGAGCTTTGAAGTCATTTGAGATGTGTGCAGATGGAAAGCCCAGTTTAGAATTAGTCATGTGTCTGCATGTTTTGGCAACAATATACTGTAATTTAGGACAATACAATGAGGCTATTCCCATTCTTGAGCGTTCCATTGATATTCCTGTATTAGAGAATGGCCAAGATCATGCACTGGCTAAGTTTGCAGGGTGCATGCAATTGGGTGATACTTATGCAATGATGGGGCAGATTGAGAATTCTATACTGTTTTATACAGTAGGCCTTGAAATTCAAGGGCAGGTCTTGGGGGGAACAGACCCGCGGTTTGGTGAGACGTGTCGCTATGTGGCTGAGGCCCATGTTCAGGCACTGCAGTTTGATGAAGCTAAGAAGCTGTGTCAGACAGCTCTTGATATTCACAGGGGAAATGGGTCTCCTACTTCAGTTGAGGAAGCAGCAGATAGGAGACTGATGGGGCTTATCTGTGACTCAAAGGGTGATTATGAAGCTGCTCTAGAGCANTATGTTTTAGCAAGCATGGCCATGGTAGCAAATGGCCAGGAAGTGGATGTGGCTTCAGTTGATTGCAGTATAGGTGATGCCTATTTGTCATTGGCACGCTATGATGAGGCAGTGTTTTCTTATCAGAAAGCACTCACTGTGTTCAAATCAACCAGAGGAAAGAACCATCCAAAAGTTGCTTCAGTCTATGCCCGGTTAGCTGATTTGTACAACAAGATAGGGAAGTTCAAGGAATCACAATCCTACTGTGNAAATGCACTCAGGATTTTTGGGAAGACTAACCCTGGGATCTCCTCAGAAGAGATTGCTAATGGTATGATAGATGTTGCTGCTATCTATCAATCCATGAACGAATTGGAGAAGGGATTGAAGTTGCTCAAAAAGGCCTTGAAGTTATATGGCAATGCTCCTGGTCAACAAAATACTATTGCAGGAATTGAGGTCCAAATGGGGGTTCTGTACTATATGCTGGGGAACTATTCTGATTCTTACAACATCTTTAAAAGTGCCATTGCCAAGCTTCGTGCAAGTGGAGAGAAAAAATCTGCTTTGTTTGGGATTGCATTGAACCAAATGGGTCTTGCTTGCATCCAGCATTATGCTATAAATGAGGCAGCAGATTTGTTTGAAGAGGCAAGGACTATATTGGAGAAAGAGTATGGTCCTTATCACCCAGACACCTTAGGGGTCTATAGCAATCTAGCAGGAACCTATGATGCAATGGGAAGAGTGGATGATGCCATTGAAATTTTGGAATATGTAGTTGGCATGAGAGAAGAGAGGCTTGGAACAGCAAACCCTGATGTGGATGATGAGAAACGTAGGTTGGCAGAGTTGTTGAAAGAAGCAGGCAGGGCTCGGAACAGGAAGTCAAAAAGATCATTGGAAACTCTCCTTGATACACTTGGCATCAAGGTCCTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04034	15978	18107	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004034s00034235.1	PF13374.1	TPR_10	180	207	0.0017
Glyur004034s00034235.1	PF13424.1	TPR_12	344	418	1.20E-12
Glyur004034s00034235.1	PF13424.1	TPR_12	515	587	5.70E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.768
SRR1783600	control	0.740
SRR1783602	moderate drought stress	1.450
SRR1811619	moderate drought stress	1.458

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.002
DRR006520	Root Summer glycyrrhizin high producing strain	1.061
DRR006521	Root Winter glycyrrhizin high producing strain	0.116
DRR006522	Root Winter glycyrrhizin high producing strain	0.114
DRR006523	Root Summer glycyrrhizin low producing strain	0.318
DRR006524	Root Summer glycyrrhizin low producing strain	0.344
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.033
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.048

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.977
SRR2868004	Drought Stress (root)	1.177
SRR2967015	Control (root)	0.832

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.053
SRR9715740	Leaf	1.837
SRR9715741	Leaf	1.077
SRR9715739	Root	0.211
SRR9715742	Root	2.229
SRR9715743	Root	1.765

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.153
SRR8749028	MeJA induced 9h	0.171
SRR8749029	MeJA induced 9h	0.222
SRR8749030	Uninduced	0.120
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.015

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.120
SRR8400027	Control - Root	3.041