Gene detail information of Glyur004026s00039330 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | AHG28981.1 | 4.30E-69 | NBS-LRR protein [Cicer arietinum] |
| COG | YP_006590811.1 | 8.00E-06 | 30S ribosomal protein S1 [Methylocystis sp. SC2] |
| Swissprot | tr|P26863|RT01_MARPO | 2.00E-15 | Ribosomal protein S1, mitochondrial |
| trEMBL | tr|W0M152|W0M152_CICAR | 2.00E-69 | NBS-LRR protein {ECO:0000313|EMBL:AHG28981.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04026 | 12921 | 16733 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.708 |
| SRR1783600 | control | 3.692 |
| SRR1783602 | moderate drought stress | 2.819 |
| SRR1811619 | moderate drought stress | 2.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.702 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.195 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.467 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.671 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.073 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.951 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.374 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.876 |
| SRR2868004 | Drought Stress (root) | 6.566 |
| SRR2967015 | Control (root) | 5.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.360 |
| SRR9715740 | Leaf | 2.002 |
| SRR9715741 | Leaf | 4.145 |
| SRR9715739 | Root | 1.764 |
| SRR9715742 | Root | 3.821 |
| SRR9715743 | Root | 3.427 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.540 |
| SRR8749028 | MeJA induced 9h | 3.231 |
| SRR8749029 | MeJA induced 9h | 2.293 |
| SRR8749030 | Uninduced | 4.293 |
| SRR8749031 | Uninduced | 2.433 |
| SRR8749032 | Uninduced | 2.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.927 |
| SRR8400027 | Control - Root | 6.152 |