Gene detail

Gene detail information of Glyur004026s00039328

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G38380.1	5.00E-132
NR	KEH25351.1	0	nodulin MtN21/EamA-like transporter family protein [Medicago truncatula]
trEMBL	tr\|A0A072U7P6\|A0A072U7P6_MEDTR	0	Nodulin MtN21/EamA-like transporter family protein {ECO:0000313\|EMBL:KEH25351.1}

Sequence

Transcript Sequence

>Glyur004026s00039328.1
ATGATGTCCCCCAATCCATTGTCAGAGGATCGAGGGTCTCCCCATCATTTCAGACACACGCCCTTGCAGATTATTCATATCGTTGCAAATTTCTTGAGGATATGGTCAATATACTCCATGTTCCGCTACTTCTCCCAAACTGGAGCTTCAGTTGTTCTTTTTCTGTTTGCCTGCCTGGCCCCGGCATCCATCCTATTTTTGATTTTGCAAAAGCCTTGGAAGGGAAGGCCACTTTCTAATACACAGGTTGTGCCTTCTGTAATAAATGGTTGTATAACAGCACTGTATCTGGTCTTGTGGGGAAAGGGACTGAAATCATGTGGACCAGTAAGAGCAATATTGGCCGAGTATTCTGGTGCTGTCCTTGGTGTACTGTCTGCAGTGTTGTATGGTAGGAGAAGTCATCTGTGGAAAAAGATAGGTGGCCTAATCGCCATGCTGGCATCATTTTACCTGCTATCTGAAGGATGGGCCACAGCGACATATTCTCCATTCTATATCCTCACTCAGACTGTAGATGAGTCAGAGACTCAGGCTGAACAAGTTTTGGGCTTGAAGCAAATGTTAGTTCCTATTTCTGCTGGTATTCTGTCAGCCCTTAGAAGAGTGATTGCTAGGCGTGTTTCAATCAAGGTGTATTTTCTCTTTGGTCTCATGGGCTTTATGTGTGCCCTAATATCTAACCCTGAACATCTTTTGTTTTCAGAATCAACTCAAAAGGCGACTCCATGCTTTAACTATTGCTTCTGCGACGGATCACCTTCTGACAGCAATGGGAAATTGCCGTTCTCTGCTTGGGCCTTCTTGAGCACTATTCTCTTTGGAAATATCGTGATATTCTATGCTGACAGTATTGCAGAGGAGAGATTGCACATGGTTTTCTCCTCACCGAGGCATTTGATGGTGGCTGGTGCATGCATCATCGTCATGGAGATTGTGTACAAGATGGATTTTTCTCTCATGGGCTTCGTGATTTGCTGCTTAATATTAGGTTTTGGGATATATGAAGCAACTTCATTGGAGCACAATAGAAAAGATTCTACCCGGAATTCAGATTTATCAAATGGGGAATTTGATGATCATATCCAGATGCTGTTTGAGAGCACCAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04026	448	5667	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0008324 cation transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004026s00039328.1	PF00892.15	EamA	34	153	4.20E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.971
SRR1783600	control	4.508
SRR1783602	moderate drought stress	4.933
SRR1811619	moderate drought stress	4.834

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.349
DRR006520	Root Summer glycyrrhizin high producing strain	4.496
DRR006521	Root Winter glycyrrhizin high producing strain	4.003
DRR006522	Root Winter glycyrrhizin high producing strain	3.719
DRR006523	Root Summer glycyrrhizin low producing strain	5.614
DRR006524	Root Summer glycyrrhizin low producing strain	5.527
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.037
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.867

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.087
SRR2868004	Drought Stress (root)	10.535
SRR2967015	Control (root)	8.350

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.569
SRR9715740	Leaf	11.262
SRR9715741	Leaf	11.236
SRR9715739	Root	3.042
SRR9715742	Root	4.958
SRR9715743	Root	4.187

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.842
SRR8749028	MeJA induced 9h	6.110
SRR8749029	MeJA induced 9h	3.592
SRR8749030	Uninduced	2.812
SRR8749031	Uninduced	1.071
SRR8749032	Uninduced	1.075

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.331
SRR8400027	Control - Root	10.006