Gene detail

Gene detail information of Glyur004008s00037411.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G40940.1	0	ethylene response sensor 1
NR	XP_004494397.1	0	PREDICTED: ethylene response sensor 1-like isoform X1 [Cicer arietinum]
COG	YP_007109317.1	1.00E-71	multi-sensor hybrid histidine kinase [Geitlerinema sp. PCC 7407]
Swissprot	tr\|O81122\|ETR1_MALDO	0	Ethylene receptor
trEMBL	tr\|G7KSQ0\|G7KSQ0_MEDTR	0	Ethylene receptor {ECO:0000313\|EMBL:AES82151.2}

Sequence

Transcript Sequence

>Glyur004008s00037411.1
ATGATGGAATCGTGTGATTGCATCGACACACACTGGCCCCCAGATGAGCTTCTTGTGAAATATCAGTACATATCTGATGTGCTTATTGCATTGGCATACTTCTCCATTCCTGTGGAGCTGATATATTTTGTTCACAAATCGGCTTTCTTCCCCTATCGATGGGTGCTTATGCAATTTGGGGCTTTCATTGTTCTCTGTGGGGCAACTCACTTCATAAACTTGTGGACATTCACCGCGCACTCCAAATCCGTTGCTGTGGTGATGACAATTGCCAAGATCTCGTGTGCCATCGTGTCCTGTGCCACCGCGCTGATGCTTGTTCACATCATCCCTGACCTGTTGAGTGTCAAGACCCGTGAGCTGTTTCTCAGGCACAAGGCTGAGGAGCTAGACAGGGAGATGGGACTCATTCTCTCCCAAGAAGAAACGGGGAGGCACGTGAGGATGTTGACTCATGAGATTAGGAGCAAACTTGACAGGCATACCATTCTCAAGACTACCCTTGATCAGCTGGGTAGGACTTTGTGCTTGGAGGAGTGTGCACTATGGATGCCATCCAGGAGTAGTTTGAATTTGCAGCTTTCTCATACTTTGAGCTACCAGGTGCAAGTTGGGTCTACTGTGCCAACAAGTCTTCCCATTGTCAATGAAGTCTTCGGTAGTCCTCGAGCAATACGGATACCGCACACATGCCCACTGGCCGGGATCAGACCTCTTGTGGGGAGATATGTGTCGCCCGAAATTGTTGCTGTGAGGGTGCCTCTTTTACATCTCTTGAATTTCCAAATTAATGATTGGCCTGAACTTTCGGCGAAAAGCTATGCGATCATGGTTCTGATCCTACCTACTGACAGTGCTAGAAAATGGCGAGACCATGAGTTGGAACTTGTTGATGTTGTTGCTGAGCAGGTAGCAGTTGCACTTTCACATGCTGCCATTTTGGAGGAGTCGATGCTAGCCCGTGATCAACTCATGGAGCAGAATATTGCTTTAGATTTAGCTCGAAGGGAGGCAGAGATGGCAATTCATGCTCGCAATGATTTTCTTGCTGTCATGAATCATGAAATGAGGACACCAATGCATGCGATTATAGCACTGTCATCACTTCTCTTGGAGTCCGAGCTTACTCCAGAGCAGAGGGTCATGATAGAGACAGTATTAAAGAGTAGTAACGTTTTGGCAACATTAATCAATGATGTTCTAGATCTTTCTAATCTGGAAGATGGCAGCCTTGAATTAGAAATGGGAAAATTCAACCTTCACAGGCTTTTTGGGGAGGCCATTAATCTGATAAAGCCTATAGCATCAGTGAAGAAATTGCCTTTGACCTTAATTCTGGTCCCTGATCTGCCTATATTTGCCATTGGTGATGAAAAACGGCTTATGCAAACTCTTTTGAATGTTGTGGGCAATGCTGTTAAATTCACTAAAGAGGGCCATGTTTCTATGAGAGCATCTGTTGCGAAACCAGAATCTTTACAGGATTGGCGACCTCCAGAGTTTTATCCATCATCAAGTGATGGTCACTTCTACATGCGAGTACAGGTTAGGGATTCTGGCTGTGGCATTCAACCACAAGATATTCCACATCTCTTTACTAAATTTACTCAGTCTCGGAGTGGACTCACTCAACCTAGCAGTGGTGCCGGTCTTGGGCTTGCAATATGTAAAAGATTTGTAAATCTCATGGGAGGTCACATATGGATTGAGAGTGAGGGCCTCGATAAAGGAACTACAACAACATTCATTGTCAAACTTGGAATTTGTGGCAATCCTGATTCGTCAGGGCACCAAGTTGCTAAGAGAGGCCAAGCATACAGCGGAAGTGGAGACCTCATTGGATATAAGCCCTTTGTCAAGGATAATGATGAGCTACGTTTTTCTAATCGACGCTATCAAAGAAGTCTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04008	3930	7262	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14509	ETR, ERS	EC:2.7.13.-	MAPK signaling pathway - plant	map04016
			Plant hormone signal transduction	map04075

Gene Ontology

biological_process

GO:0007165 signal transduction

GO:0016310 phosphorylation

cellular_component
GO:0016020 membrane

molecular_function

GO:0000155 phosphorelay sensor kinase activity

GO:0004871 signal transducer activity

GO:0005515 protein binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004008s00037411.1	PF01590.21	GAF	159	308	3.30E-12
Glyur004008s00037411.1	PF00512.20	HisKA	345	409	2.50E-16
Glyur004008s00037411.1	PF02518.21	HATPase_c	456	586	1.40E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.180
SRR1783600	control	7.250
SRR1783602	moderate drought stress	6.882
SRR1811619	moderate drought stress	6.927

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.273
DRR006520	Root Summer glycyrrhizin high producing strain	7.315
DRR006521	Root Winter glycyrrhizin high producing strain	20.598
DRR006522	Root Winter glycyrrhizin high producing strain	20.726
DRR006523	Root Summer glycyrrhizin low producing strain	9.360
DRR006524	Root Summer glycyrrhizin low producing strain	9.377
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.089
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.971

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.718
SRR2868004	Drought Stress (root)	14.148
SRR2967015	Control (root)	12.360

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.050
SRR9715740	Leaf	6.287
SRR9715741	Leaf	9.453
SRR9715739	Root	11.346
SRR9715742	Root	15.503
SRR9715743	Root	15.662

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.716
SRR8749028	MeJA induced 9h	8.476
SRR8749029	MeJA induced 9h	4.374
SRR8749030	Uninduced	6.498
SRR8749031	Uninduced	2.138
SRR8749032	Uninduced	3.123

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.120
SRR8400027	Control - Root	26.118