Gene detail information of Glyur004008s00037410 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G02780.1 | 3.00E-78 | Ribosomal protein L19e family protein |
| NR | XP_004495933.1 | 1.03E-138 | PREDICTED: 60S ribosomal protein L19-1-like [Cicer arietinum] |
| COG | YP_183936.1 | 4.00E-37 | 50S ribosomal protein L19e [Thermococcus kodakarensis KOD1] |
| Swissprot | tr|Q9LUQ6|RL192_ARATH | 3.00E-123 | 60S ribosomal protein L19-2 |
| trEMBL | tr|A0A059AX08|A0A059AX08_EUCGR | 5.00E-133 | Ribosomal protein L19 {ECO:0000256|RuleBase:RU000574} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04008 | 636 | 2768 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004008s00037410.1 | PF01280.15 | Ribosomal_L19e | 3 | 149 | 2.00E-64 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 88.222 |
| SRR1783600 | control | 107.547 |
| SRR1783602 | moderate drought stress | 83.286 |
| SRR1811619 | moderate drought stress | 85.805 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 184.696 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 182.782 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 94.254 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 90.791 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 163.288 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 162.991 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 81.544 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 81.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 279.375 |
| SRR2868004 | Drought Stress (root) | 182.744 |
| SRR2967015 | Control (root) | 143.586 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 91.831 |
| SRR9715740 | Leaf | 88.598 |
| SRR9715741 | Leaf | 59.502 |
| SRR9715739 | Root | 55.146 |
| SRR9715742 | Root | 71.621 |
| SRR9715743 | Root | 80.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 338.893 |
| SRR8749028 | MeJA induced 9h | 172.352 |
| SRR8749029 | MeJA induced 9h | 330.177 |
| SRR8749030 | Uninduced | 58.076 |
| SRR8749031 | Uninduced | 93.797 |
| SRR8749032 | Uninduced | 110.996 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 177.499 |
| SRR8400027 | Control - Root | 152.437 |