Gene detail

Gene detail information of Glyur004006s00044562

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G35100.1	1.00E-84	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
NR	KEH38099.1	8.13E-149	peptidyl-prolyl cis-trans isomerase [Medicago truncatula]
COG	NP_868477.1	3.00E-14	peptidylprolyl isomerase [Rhodopirellula baltica SH 1]
Swissprot	tr\|O65220\|CPY28_ARATH	2.00E-104	Peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic (Precursor)
trEMBL	tr\|A0A072V7R3\|A0A072V7R3_MEDTR	3.00E-149	Peptidyl-prolyl cis-trans isomerase {ECO:0000313\|EMBL:KEH38099.1}

Sequence

Transcript Sequence

>Glyur004006s00044562.1
CTTTTTATCTGATCTAAGTAGACCCCACTGTAGGTCGCCCCTCCAAGTTCTCAGCCGCAAGACCAAAGCCAACAATGAACAACCTCACTATCACTCCTCAATGGCCTCCACCCTGNCACCACAACCACCGCCACCTCTTCCTCCCTATCGCCACTTCACGCGCCGCTCCCTCCTCCTAGCATCCACAGCAACCGCCACCGTCTCCCTCCCACCCTTCCCCGCACTCTCCCTCTCCTCCTCCAATGCCCCAACCATCACAGACCGCATCTTCATGGACTTCAGCCTCTGCCCCAACTTCTCCCTCCCGAACCGCACCCTAGGCGACACCATCACCACCCTCTGCTCCGATTCCACCCCACTCGGACGCGTCATCCTCGGACTCTACGGCAACCTCGTACCCTTAACCGTCTCGAATTTCAANTCCCTATGCACCGCCTCTTCCAACAACACCGACACACCTTCCTACAGGAACACCCTCGTCCACAAGATCTTCCCCGGTCGTTACTTCCTCGCCGGTCGACAGGGTCGTCCCGATAAGGGTGAGGTTCGTCCCCCACGCCACCTCCCTCGCAACACNGAAACGGTCGACCCTAACGCCTTCAACCTCACACATTCTGGACCCGGCGTCGTTTCGCTCTCTCTCTCCGAAAACGACGATGACCAGGAAATTAAGTTTGACCCTGGTTACCGTAACGTCGAGTTCTTAATCACCACTGGGCCTGGACCTTGCCCCAACCTCGATAATAAGAATATCGTCTTTGGAACCGTACTTGAAGGGTTGGATGTCATCACAACCATAGCTTCCCTTCCCACATACCAACCGTCTGAACGAATTCGCCAATTCAATGACTTGGCTGAGTTCTTTGGAGACGAGAGGGCCCAGAATGCCCGTGCCATATGGAACAGGCCTCTTACTACTGTTTATATCAGTGACTGTGGGGAGCTACAGGTTGCAAAGCCTTCCCTCACGCCTTCTCTCCCTTAATTTCATTCCCTGTATANATTATCTCATCATATAACTGGTGTATGTAAAATCATACTCAAATTCTTTGAAAGGAAATGGTGATGAATGAAGCTTAATCCTAAAGTGAACAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04006	16129	18276	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000413 protein peptidyl-prolyl isomerization

GO:0006457 protein folding

molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004006s00044562.1	PF00160.16	Pro_isomerase	87	243	7.80E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	52.192
SRR1783600	control	52.233
SRR1783602	moderate drought stress	33.585
SRR1811619	moderate drought stress	33.189

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.500
DRR006520	Root Summer glycyrrhizin high producing strain	23.198
DRR006521	Root Winter glycyrrhizin high producing strain	9.069
DRR006522	Root Winter glycyrrhizin high producing strain	8.897
DRR006523	Root Summer glycyrrhizin low producing strain	19.923
DRR006524	Root Summer glycyrrhizin low producing strain	19.252
DRR006525	Leaf Summer glycyrrhizin high producing strain	113.966
DRR006526	Leaf Summer glycyrrhizin high producing strain	112.567

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.722
SRR2868004	Drought Stress (root)	10.839
SRR2967015	Control (root)	11.397

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	35.773
SRR9715740	Leaf	33.894
SRR9715741	Leaf	27.921
SRR9715739	Root	14.588
SRR9715742	Root	9.364
SRR9715743	Root	8.016

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.376
SRR8749028	MeJA induced 9h	5.135
SRR8749029	MeJA induced 9h	3.189
SRR8749030	Uninduced	1.763
SRR8749031	Uninduced	0.541
SRR8749032	Uninduced	0.529

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.479
SRR8400027	Control - Root	15.477