Gene detail

Gene detail information of Glyur004006s00044561

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G67340.1	2.00E-135	HCP-like superfamily protein with MYND-type zinc finger
NR	XP_003531195.1	0	PREDICTED: F-box protein At1g67340-like [Glycine max]
Swissprot	tr\|Q9FYF9\|FB76_ARATH	9.00E-171	F-box protein At1g67340
trEMBL	tr\|I1KS21\|I1KS21_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G10980.1}

Sequence

Transcript Sequence

>Glyur004006s00044561.1
TCTCTCAAGGGAGAGAGATAGAGAGAAATACAAAGATAGAGGGAGTAGGGATATGAGAACAAGGAGAGGGGCGTGTTATCCAGAACGTGGTGCTGGTGGAGTAGTTACAAGGATGTGTTCCGTTGCGAAGAGAAAGAAGGATATGCATATGCATATACATACGCATATGCACAGAGAGTCTATTTTTAACCGGAAGAGGCAAAAGAAATCTCCGGACAAAACCGGCAGGGAATACGATTTTTTCGAGTCTTTACCGGATGACCTCGTAATCTCTATCTTCTGCAAGCTTAGCTCCACCGCCACTTCCCCGTCCGATTTTGTCAGCGTTTTGATAACGTGTAAGAGATTAAACCGATTAGCACTTCATTCTCTTGTATTATCCAAAGCTTCCCCTAGAATTTTCTCTATTAGAGCCAAAAACTGGTGCGATTCGGCACATAGCTTTCTCAAACACTGTGCCGATGCGGGAAACGTTGAAGCCAGCTATACTTTGGGCATGATCCGCTTCTACTGTTTGCAAAACAGAGGAAGCGGGGCTTCGTTGATGGCGAAGGCTGCCATAAGCTCTCACGCGCGTGCTCTCTACTCGCTAGCAGTTATACAGTTCAACGGCAGCGGCGGCACCAAAAGCGACAAGGACCTACGCGCCGGCGTGGCTCTCTGCGCCAGAGCAGCTTTCCTCGGCCACATCGACGCTTTGCGCGAGCTCGGCCACTGTTTGCAAGACGGTTACGGTGTCCGACAGAACATCGCCGAGGGACGGCGATTCCTCATCCAGGCCAACGCACGCGAACTCGCCGCCGTGTTGTCCTCCGGTGCCGCCGCAAGAAACTGGATGACGTGGAACCTCAACCCGCAGCTCCGGCAAGTCGTGGCGTCCGGGTGTCCGCTGCTAAGCGATTTCGGGTGCAACGTGCCGGCGCCGGAGCCACACCCGGCGAGCCGGTTCATGGCGGAGTGGTTCGCGGCTCGGGGCGGTTCGCCCGGTCCGGGTCTCCGNCTTTGTTCGCATGCGGGTTGTGGCAGGCCAGAGACGCGGAAGCACGAGTTTCGAAGATGTTCGGTGTGTGGCGCGGTGAACTATTGCTCACGCGCGTGTCAGGCGCTTGATTGGAAGTTCCGGCACAAGGCGGAATGCGCCCCTGTTGAGCAGTGGCTTGATGAGGAGGGCGAGGACGCCGTTGAAGATGACGGCGACGATGAGTTGATGGTTATGGAGGATAGTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04006	3957	5448	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004006s00044561.1	PF08238.7	Sel1	174	212	0.75
Glyur004006s00044561.1	PF08238.7	Sel1	214	243	0.39
Glyur004006s00044561.1	PF01753.13	zf-MYND	321	362	1.90E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.939
SRR1783600	control	8.871
SRR1783602	moderate drought stress	14.020
SRR1811619	moderate drought stress	13.955

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.076
DRR006520	Root Summer glycyrrhizin high producing strain	9.480
DRR006521	Root Winter glycyrrhizin high producing strain	24.914
DRR006522	Root Winter glycyrrhizin high producing strain	26.418
DRR006523	Root Summer glycyrrhizin low producing strain	13.752
DRR006524	Root Summer glycyrrhizin low producing strain	13.514
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.599
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.680

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.242
SRR2868004	Drought Stress (root)	28.228
SRR2967015	Control (root)	23.542

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.442
SRR9715740	Leaf	35.485
SRR9715741	Leaf	28.480
SRR9715739	Root	36.530
SRR9715742	Root	24.554
SRR9715743	Root	24.820

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.556
SRR8749028	MeJA induced 9h	6.244
SRR8749029	MeJA induced 9h	7.678
SRR8749030	Uninduced	18.160
SRR8749031	Uninduced	23.092
SRR8749032	Uninduced	28.223

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.524
SRR8400027	Control - Root	15.216