Gene detail information of Glyur004001s00045914 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G42170.1 | 6.00E-35 | BED zinc finger ;hAT family dimerisation domain |
| NR | XP_003591965.1 | 1.04E-135 | Elongation factor 1-alpha [Medicago truncatula] |
| Swissprot | tr|Q6AVI0|RSLE2_ORYSJ | 2.00E-59 | Zinc finger BED domain-containing protein RICESLEEPER 2 |
| trEMBL | tr|M5XR65|M5XR65_PRUPE | 4.00E-114 | Uncharacterized protein {ECO:0000313|EMBL:EMJ28414.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04001 | 3368 | 5561 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004001s00045914.1 | PF02892.10 | zf-BED | 48 | 90 | 1.60E-12 |
| Glyur004001s00045914.1 | PF14372.1 | DUF4413 | 397 | 491 | 6.80E-20 |
| Glyur004001s00045914.1 | PF05699.9 | Dimer_Tnp_hAT | 479 | 539 | 5.10E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.143 |
| SRR1783600 | control | 1.234 |
| SRR1783602 | moderate drought stress | 1.677 |
| SRR1811619 | moderate drought stress | 1.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.762 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.753 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.135 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.312 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.383 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.461 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.105 |
| SRR9715740 | Leaf | 4.937 |
| SRR9715741 | Leaf | 3.948 |
| SRR9715739 | Root | 0.747 |
| SRR9715742 | Root | 2.959 |
| SRR9715743 | Root | 3.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.018 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.681 |
| SRR8400027 | Control - Root | 3.916 |