Gene detail information of Glyur003994s00042985


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G01320.10Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
NRXP_007026634.10Thiamine pyrophosphate dependent pyruvate decarboxylase family protein [Theobroma cacao]
COGYP_007568556.10Pyruvate decarboxylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
Swissprottr|Q9M040|PDC4_ARATH0Pyruvate decarboxylase 4
trEMBLtr|A0A061EQM3|A0A061EQM3_THECC0Thiamine pyrophosphate dependent pyruvate decarboxylase family protein {ECO:0000313|EMBL:EOY07136.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold03994730412844-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
K01568PDC, pdcEC:4.1.1.1Glycolysis / Gluconeogenesismap00010


Gene Ontology

molecular_function

GO:0000287  magnesium ion binding

GO:0003824  catalytic activity

GO:0016831  carboxy-lyase activity

GO:0030976  thiamine pyrophosphate binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003994s00042985.1PF02776.13TPP_enzyme_N432091.40E-34
Glyur003994s00042985.1PF00205.17TPP_enzyme_M2403591.40E-17
Glyur003994s00042985.1PF02775.16TPP_enzyme_C4505753.70E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.437
SRR1783600control7.552
SRR1783602moderate drought stress3.129
SRR1811619moderate drought stress3.429

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.308
DRR006520Root Summer glycyrrhizin high producing strain8.299
DRR006521Root Winter glycyrrhizin high producing strain992.235
DRR006522Root Winter glycyrrhizin high producing strain965.919
DRR006523Root Summer glycyrrhizin low producing strain16.450
DRR006524Root Summer glycyrrhizin low producing strain16.608
DRR006525Leaf Summer glycyrrhizin high producing strain0.740
DRR006526Leaf Summer glycyrrhizin high producing strain0.860

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)1.712
SRR2868004Drought Stress (root)0.861
SRR2967015Control (root)0.895

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf2.389
SRR9715740Leaf0.615
SRR9715741Leaf2.308
SRR9715739Root14.256
SRR9715742Root30.408
SRR9715743Root24.411

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h359.761
SRR8749028MeJA induced 9h654.224
SRR8749029MeJA induced 9h1185.654
SRR8749030Uninduced471.426
SRR8749031Uninduced984.606
SRR8749032Uninduced1723.449

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root15.299
SRR8400027Control - Root13.234

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved