Gene detail

Gene detail information of Glyur003990s00042128.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55550.1	0	Concanavalin A-like lectin protein kinase family protein
NR	XP_003537463.2	0	PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Glycine max]
COG	YP_004571825.1	2.00E-24	serine/threonine protein kinase [Microlunatus phosphovorus NM-1]
Swissprot	tr\|Q9M2S4\|LRKS4_ARATH	0	L-type lectin-domain containing receptor kinase S.4 (Precursor)
trEMBL	tr\|I1LMH1\|I1LMH1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G34210.1}

Sequence

Transcript Sequence

>Glyur003990s00042128.1
ATGGCAAAAACACCCCTGCTCCTTCTCTGCTTCGTGATCCTTCTTANGGTCTCAAACCCTGCAAATTCTCAGCACGATGAGCTCTTCTTTGATGGGTTCGATGGAGCTTCCGCCACCAACATAAGCTTAAACGGAGGTGCAGTGATTGAGCACAAAGGGATACTTCGTCTAACAAACGACACTCAAAGAGTGATTGGGCACGCGTTTTATCCAACCCCAATCCACTTCAAGAATAACTCCTCAACCTCCAACTCCACCAACACCACAGTTTTCTCCTTTTCCACTGCTTTTGCCTTTGCAATAGTACCCCAGTACCCAAAACTTGGAGGGCATGGCTTTGCCTTCACAATTTCTCGCTCCAAAGAGCTTCACGGTGCNTATCCTAGCCAATACCTTGGCCTCCTTAACCCAAACGATTTGGGGAATTTCTCAAACCACCTATTCGCAGTTGAATTCGACACTGTCCAAGACTTTGAATTCGGAGACATCAATGATAACCACGTGGGCATCAACCTCAACAACATGGCATCCAACAAATCGGTCAAAGCTGGTTTTTTCACTGAAGGGTCAACGAATAACAAGCAAGACCTTAATTTGAAGAGTGGAACAGTGATTCAGGCATGGGTCGACTACGATTCCAACAAGAACCAGTTGGAAGTAAGGCTCTCCCCAACTTCTANAAAACCCAGTTCCCCAATCTTGTCTTACCAAGTAGATCTCTCTCCAATTCTCAAAGACACTATGTACGTTGGGTTCTCTGCTTCAACAGGGTTGCTCGCGAGCTGGCACTATATCTTAGGTTGGAGCTTCAAAATCAATGGAGAGGCCAAAACGTTGTCTTTGGAAAAACTACCTTCGCTCTCNGCATCTAAAAATAACACCCGAAAAAAGGCCTTAATTTTGGGACTCTCTATTGGGATTCTAATACTAGCAACAATAATTGGGTTAGCTTTTTATTACATAAAGATGAGAAACGCTGAGGTAATCCAAGCTTGGGAGCTAGAAGTTGGTCCACACAGGTTNCCTTACAGAGAACTAAAGCAAGCAACAAGAGGGTTCAAAGACAAGAACCTACTCGGGTTCGGTGGTTTCGGTAAAGTCTACAAAGGGGTACTCCAAAACACCAACGCCGANATCGCAGTGAAGCGAATCTCCCACGATTCAAAACAAGGGTGGCAAGAGTTCCTCTCTGAGATCTCAACCATCGGGAGGCTCCGACACAGGAACCTNGTACAGTTACTAGGTTGGTGTCGGAAGCATAACGATCTTCTTCTAGTGTACGATTTCATGAANAATGGAAGCTTGGATAAGTACCTATTCGACGCACCGAGGGAAACACTGAGTTGGGAACAGAGGTTTAGAATCATAAAGGGGGTGGCTTCTGGGCTTGTGTATTTGCACGAGGAATGGGAACAAGCGGTGATTCACAGAGATGTTAAAGCAGGGAATGTTCTGTTAGATGAAGAGATGAATGGGAGGTTAGGTGATTTCGGTTTGGCGAAGCTTTACGATCACGGTNAGAACCCAAGCACGACGAGGGTGGTGGGTACGTTGGGGTACATGGCGCCTGAACTCACGCGCACGGGGAAACCAACGGCGAGTTCCGATGTGTTTGCGTTTGGGGCTTTGTTGCTTGAAGTTGTTTGTGGGAGGAGGCCCATTGAGCCCAAAGCNATGCCGGAGNAGCTTGTTTTGGTGGATTGGGTTTGGGACAGGTGGCGCGTGGGGTCCACGCTTGAGGTTGTGGACTTTAAGTTGGGTGGGGTTTATGATGAGGAGGAGGTGTTGCTTGTGATCAAGGTTGGGTTGTTGTGTTCCGGTGAGTTGCCGGAAGTGAGGCCTACCATGAGGCAGGTTGTGAGGTACNTGGAGAGGGAGGTGCCGCCGCCGGAGGTGGATGGGTTGAAGAAGGAGGGTGGTGGAGGAGGTGGGTTTGAGGATTATGTGCATTCGTATCCGACGTCGTCGTTTTTTGACAGGGCGAATACGTGGTCTTCGGCTGGTGATGACGTGGAAGGTTGCTCTGCTTCGTCTCTTTCGCTTTCCGGTGGCCGGGAGGATGGGACACAACTCATAATCGCAAACAACTGCAAGGAGAGTGTATGGCCTGGAATTCTTGGCAATGTGGGACACCCTTCTCTTAAAGGTGGTGGCTTTCACCTTGCGAGCGGCGAAGAGGTTGTTCTCCAAGTACCCAAGATGTGGTCGGGGAGAATATGGGGAAGACAAGGTTGTTTCTTTAACGACCAAACGGGAAAAGGGTCTTGNCAAACAGGGGATTGTGGAGGCCTCTTGCAATGCAGGGGAATTGGTGGGGTCCCACCANCTACCCTTGTGGAAATGACACTTGGAACCTCACAATCCTCGTTGCATTTCTATGATGTTAGTTTGGTCGATGGGTTTAACCTTCCCGTNTCAATGAAACCTATAATTGGTGGTGTTAGTGGTAGTGGTAATTGTGGTGTTGCAGCATGTGATGTTGACTTAAATGTTTATTGCCCATCTTCAATGGTTGTGAAGTGGCATCATGATGATGGGAAAATTGTGGGGTGCAAGAGTGCTTGTTTGGCTGCAAAATCGGATAGGTATTGTTGTACTGGGGAGTTTGTTGACCCAGGAAAGTGCAAGCCAACTCTGTTTTCTCGTCNTTTTAAGACCTTTTGCCCTCATGCTTATAGCTATGCTTATGATGACTCCGCGGGGCTTAAGAGTTGCAAGGCACCTCGGTATGTCATTACGTTTTGCCCTCTACACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03990	12123	17908	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.11.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003990s00042128.1	PF00139.14	Lectin_legB	27	271	2.70E-77
Glyur003990s00042128.1	PF00069.20	Pkinase	355	558	1.60E-49
Glyur003990s00042128.1	PF00314.12	Thaumatin	695	916	1.40E-74

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.819
SRR1783600	control	0.783
SRR1783602	moderate drought stress	1.257
SRR1811619	moderate drought stress	1.207

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.663
DRR006520	Root Summer glycyrrhizin high producing strain	3.789
DRR006521	Root Winter glycyrrhizin high producing strain	1.408
DRR006522	Root Winter glycyrrhizin high producing strain	1.280
DRR006523	Root Summer glycyrrhizin low producing strain	3.534
DRR006524	Root Summer glycyrrhizin low producing strain	3.335
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.637
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.584

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.326
SRR2868004	Drought Stress (root)	11.204
SRR2967015	Control (root)	8.129

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.716
SRR9715740	Leaf	3.985
SRR9715741	Leaf	8.600
SRR9715739	Root	1.374
SRR9715742	Root	12.785
SRR9715743	Root	9.639

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.437
SRR8749028	MeJA induced 9h	2.698
SRR8749029	MeJA induced 9h	0.356
SRR8749030	Uninduced	4.232
SRR8749031	Uninduced	0.502
SRR8749032	Uninduced	1.241

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.138
SRR8400027	Control - Root	5.865