Gene detail information of Glyur003989s00041805 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G20050.1 | 8.00E-40 | T-complex protein 1 alpha subunit |
| NR | CAN67647.1 | 6.76E-48 | hypothetical protein VITISV_011460 [Vitis vinifera] |
| COG | NP_341830.1 | 4.00E-08 | thermosome subunit beta [Sulfolobus solfataricus P2] |
| Swissprot | tr|P28769|TCPA_ARATH | 7.00E-46 | T-complex protein 1 subunit alpha {ECO:0000303|PubMed:11599560} |
| trEMBL | tr|A5B8L4|A5B8L4_VITVI | 3.00E-48 | T-complex protein 1 subunit alpha {ECO:0000256|RuleBase:RU004191} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03989 | 5210 | 17189 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003989s00041805.1 | PF00118.19 | Cpn60_TCP1 | 10 | 104 | 1.10E-11 |
| Glyur003989s00041805.1 | PF00154.16 | RecA | 85 | 150 | 1.10E-09 |
| Glyur003989s00041805.2 | PF00118.19 | Cpn60_TCP1 | 10 | 104 | 1.10E-11 |
| Glyur003989s00041805.2 | PF00154.16 | RecA | 85 | 150 | 1.10E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.963 |
| SRR1783600 | control | 4.093 |
| SRR1783602 | moderate drought stress | 3.552 |
| SRR1811619 | moderate drought stress | 3.500 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.342 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.900 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.088 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.189 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.774 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.627 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.284 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.335 |
| SRR2868004 | Drought Stress (root) | 15.186 |
| SRR2967015 | Control (root) | 13.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.957 |
| SRR9715740 | Leaf | 1.635 |
| SRR9715741 | Leaf | 1.499 |
| SRR9715739 | Root | 0.301 |
| SRR9715742 | Root | 1.057 |
| SRR9715743 | Root | 0.738 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 41.927 |
| SRR8749028 | MeJA induced 9h | 37.110 |
| SRR8749029 | MeJA induced 9h | 46.341 |
| SRR8749030 | Uninduced | 28.109 |
| SRR8749031 | Uninduced | 14.687 |
| SRR8749032 | Uninduced | 17.609 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.068 |
| SRR8400027 | Control - Root | 6.959 |