Gene detail information of Glyur003982s00042414 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G68570.1 | 4.00E-90 | Major facilitator superfamily protein |
| NR | XP_003614522.1 | 6.52E-131 | Peptide transporter PTR [Medicago truncatula] |
| COG | YP_001818408.1 | 1.00E-07 | TGF-beta receptor type I/II extracellular protein [Opitutus terrae PB90-1] |
| Swissprot | tr|Q9SX20|PTR18_ARATH | 7.00E-108 | Protein NRT1/ PTR FAMILY 3.1 |
| trEMBL | tr|G7JZD5|G7JZD5_MEDTR | 2.00E-131 | Peptide/nitrate transporter {ECO:0000313|EMBL:AES97480.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03982 | 17044 | 18510 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003982s00042414.1 | PF00854.16 | PTR2 | 1 | 118 | 1.10E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.710 |
| SRR1783600 | control | 15.691 |
| SRR1783602 | moderate drought stress | 14.299 |
| SRR1811619 | moderate drought stress | 14.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.224 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.191 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 108.847 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 104.730 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.466 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.525 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 91.819 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 86.987 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.581 |
| SRR2868004 | Drought Stress (root) | 9.344 |
| SRR2967015 | Control (root) | 20.864 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 229.250 |
| SRR9715740 | Leaf | 174.727 |
| SRR9715741 | Leaf | 225.509 |
| SRR9715739 | Root | 2.729 |
| SRR9715742 | Root | 6.170 |
| SRR9715743 | Root | 5.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.629 |
| SRR8400027 | Control - Root | 16.256 |