Gene detail information of Glyur003982s00042413 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G68570.1 | 6.00E-106 | Major facilitator superfamily protein |
| NR | XP_003614522.1 | 1.02E-154 | Peptide transporter PTR [Medicago truncatula] |
| COG | YP_678209.1 | 8.00E-11 | oligopeptide transporter [Cytophaga hutchinsonii ATCC 33406] |
| Swissprot | tr|Q9SX20|PTR18_ARATH | 1.00E-124 | Protein NRT1/ PTR FAMILY 3.1 |
| trEMBL | tr|G7JZD5|G7JZD5_MEDTR | 4.00E-155 | Peptide/nitrate transporter {ECO:0000313|EMBL:AES97480.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03982 | 9985 | 15084 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003982s00042413.1 | PF00854.16 | PTR2 | 184 | 363 | 6.20E-30 |
| Glyur003982s00042413.1 | PF00854.16 | PTR2 | 368 | 513 | 6.00E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.253 |
| SRR1783600 | control | 3.078 |
| SRR1783602 | moderate drought stress | 3.447 |
| SRR1811619 | moderate drought stress | 3.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.260 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.314 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.592 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 30.800 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.779 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.688 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.975 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.977 |
| SRR2868004 | Drought Stress (root) | 5.290 |
| SRR2967015 | Control (root) | 9.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 48.608 |
| SRR9715740 | Leaf | 36.333 |
| SRR9715741 | Leaf | 57.032 |
| SRR9715739 | Root | 1.025 |
| SRR9715742 | Root | 2.051 |
| SRR9715743 | Root | 2.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.447 |
| SRR8400027 | Control - Root | 7.897 |