Gene detail information of Glyur003976s00045462 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G10870.1 | 8.00E-97 | methyl esterase 17 |
| NR | AFK43530.1 | 5.22E-172 | unknown [Lotus japonicus] |
| COG | YP_001531045.1 | 2.00E-24 | alpha/beta hydrolase fold protein [Desulfococcus oleovorans Hxd3] |
| Swissprot | tr|Q9SG92|MES17_ARATH | 3.00E-120 | Methylesterase 17 |
| trEMBL | tr|I3STD8|I3STD8_LOTJA | 2.00E-172 | Uncharacterized protein {ECO:0000313|EMBL:AFK43530.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03976 | 14695 | 18640 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003976s00045462.1 | PF12697.2 | Abhydrolase_6 | 32 | 270 | 4.00E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.972 |
| SRR1783600 | control | 3.946 |
| SRR1783602 | moderate drought stress | 5.695 |
| SRR1811619 | moderate drought stress | 5.583 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.216 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.147 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.328 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.072 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.617 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.340 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.705 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.517 |
| SRR2868004 | Drought Stress (root) | 19.977 |
| SRR2967015 | Control (root) | 15.185 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.221 |
| SRR9715740 | Leaf | 17.521 |
| SRR9715741 | Leaf | 16.255 |
| SRR9715739 | Root | 7.419 |
| SRR9715742 | Root | 4.517 |
| SRR9715743 | Root | 7.604 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.917 |
| SRR8749028 | MeJA induced 9h | 7.760 |
| SRR8749029 | MeJA induced 9h | 10.012 |
| SRR8749030 | Uninduced | 0.493 |
| SRR8749031 | Uninduced | 1.279 |
| SRR8749032 | Uninduced | 1.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.138 |
| SRR8400027 | Control - Root | 10.461 |