Gene detail

Gene detail information of Glyur003975s00041659

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37390.2	5.00E-29	Chloroplast-targeted copper chaperone protein
NR	XP_003521353.1	9.71E-129	PREDICTED: uncharacterized protein LOC100810015 [Glycine max]
Swissprot	tr\|Q94BT9\|ATOX1_ARATH	4.00E-13	Copper transport protein ATX1
trEMBL	tr\|I1JPF2\|I1JPF2_SOYBN	4.00E-129	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G33150.1}

Sequence

Transcript Sequence

>Glyur003975s00041659.1
AGGGGATTGAGTATTACTGTATAAGACCCAACCCATTTTCATACAGGCAACACACCCTTCACATGTAAGATCATGTTTTACTTTTACAAATGTTATTTATGCTTGATGGNTGAGGTCCCCACAGCAAACCGATGGTACGAGCAATCGACTCAGGTGGTACTATACTATTAGAACAAATATCCAAACGCATGCTAGTCTTGGTGAAGGTTTATTAAACTTTTAAACATTTCCTCCNTACTTCTTTAATTGCTTGATCACTTCCATTTCCACATATTTAAACAAAGAAACCGATTGAGTTTTGAATTTTCCATTTCCAATCCTATCTCTTTCTATCTCAGCTCCTCACTCCTCAATCCCAAAGGAATCGAAGCTTAAAAGCACCCAGTACCAACCTTCTTTCTGNTTCAAGCTTCAAACTTCCTTCACTGCAGAGCAGAATCTCAAAACCACTACTTTTGTCCTTCTCAGTCACCAAAATCCGGAGAGATGAAAGGCGTGGATATCTTCTGTGCATCACAGGCCTCAACAGCCATATGTCTCACCACGGATCATGCCTCTTCCTCTTCTTCTTCCAACAACACCATTCAATTCGGTGGCAGAGCCATTGATCGCCACAACCCCATCATCGCTGATCCAAGAAGAACCCCTTCCAGAGACCTCACTCATGCCCCTAGTTCTTCTTCTAGCCCCAAACCTTCCCATGATCTCCAAAAGCCCAAGAAAAACACTACTCCTCCTAAACCAAGTGACAAGAAGAAGAAGAAGAAGAATGTTGCTATAAAGGGTCATGGTCATGATCATGATCAGAAGAAGAAAAGCACGGCAGAAAAAGTGACGGAACATGTTGCCAACANTTACTCCTCTAAACCAATTGAGAGTATTCTAAGGAGGAGTTGGGTTAGGCCACCNTCTGATTTAATAATCACTCCTCCTACTTCATCCAGATATTTGCTCGGTGACACGATTTCTTTGGACGCTGTGTCAGATAATTATGAACCTGTTTTGGCTTTAACCAAGAAGGTTGATAGTAACAAGAAAAAAGCTNAAGCCGTTCATGAAGATGGTGAAAACAACCATTCATCTAAACGCTCTAGCTCCTCTGTTCCAAAGTCTGGTTCCTCAGACCAGGTTGTGGTATTNAGGGTTTCTCTGCACTGTAAAGGTTGTGAAGGGAAGGTGAGGAAACATCTCTCAAGAATGCAAGGAGTTACGTCCTTCAACATAGACTTTGCGGCAAAGAAAGTTACAGTAGTTGGCGATGTGACCCCATTGAGCGTATTGGCAAGCATATCAAAGGTGAAAACTGCACAAATTTTGCCAGCATCTGCTTCAGCTGTTGGATCTGGTACCGCAGAAACAAAGAAGACAAATTTGATCTAATTGAAGAGGAAAAAGTAGACTTTTGGTAATTTGGTATTGTTGTATGCTTTGAGTCTTATTTGGGTAGTAATTAATTTAATTAGTATAAATGCAAATGTTATCAAGTGCAGCCGTGGCTTTGAAGAGATATTGTAGTTTATTTAGAAGGAACCTTACTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03975	5517	7682	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030001 metal ion transport

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003975s00041659.1	PF00403.21	HMA	219	266	1.80E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.762
SRR1783600	control	5.866
SRR1783602	moderate drought stress	7.440
SRR1811619	moderate drought stress	7.263

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.151
DRR006520	Root Summer glycyrrhizin high producing strain	10.011
DRR006521	Root Winter glycyrrhizin high producing strain	2.460
DRR006522	Root Winter glycyrrhizin high producing strain	2.444
DRR006523	Root Summer glycyrrhizin low producing strain	18.092
DRR006524	Root Summer glycyrrhizin low producing strain	18.277
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.931
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.962

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.447
SRR2868004	Drought Stress (root)	13.176
SRR2967015	Control (root)	17.833

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.219
SRR9715740	Leaf	22.681
SRR9715741	Leaf	26.609
SRR9715739	Root	1.188
SRR9715742	Root	11.394
SRR9715743	Root	9.521

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.093
SRR8749030	Uninduced	0.079
SRR8749031	Uninduced	0.315
SRR8749032	Uninduced	0.143

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.651
SRR8400027	Control - Root	7.721