Gene detail

Gene detail information of Glyur003971s00040588

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	1.00E-128	NB-ARC domain-containing disease resistance protein
NR	XP_006433725.1	0	hypothetical protein CICLE_v10000073mg [Citrus clementina]
COG	YP_007058022.1	4.00E-13	hypothetical protein Riv7116_5077 [Rivularia sp. PCC 7116]
Swissprot	tr\|Q7XA40\|RGA3_SOLBU	0	Putative disease resistance protein RGA3
trEMBL	tr\|V4T691\|V4T691_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR46965.1}

Sequence

Transcript Sequence

>Glyur003971s00040588.1
ATGGCAGATATAGTGTTGTGCCCACTGTTGCAAGTGGTCTTTGAGAGAGTAACTTGCCATCTTCTGAAACTCGTGGCTGAGGCATGCGGCTTTGACGATGAGATTGACAAACTCAAACGTGCCTTACGCCACATCCAGCCTCTGCTTGAAGACGCAGAGCAACAACAAGCAAATAATAACAACAAAGCCCTCAAATCATGGCTCACAGAACTGAAAGGTGTGGCTTATGATGCAGATGATTTGCTTGATGAGTTCTGCTTAAAGCATTCTTCTGATGGATTGCTACCATCTCGCTCAGGGCGTTCATTTCACTATCACTTTGTGACTAATGCTGTTTCTTCTTTTAAATCATATGCTTCTTACTTAGAACTCTTCCCTAAGTTGAAAAACATTAGGCAGAATCTCGATGCTCTAGTTGGTGAGATGTCATGTTTTCATTTGAAGGAGGTGAGTGTTGCAACAGGGTGGTGTTGCAGCCTTGAACTTGGAGGGAGGAGACAAACTGGGTCTTTCATAATCAACTCAGAGGTTTATGGAAGAGAAAAGGATAAGGGAAAAATCTTGGAGCTGATTCTGAAGAAGAATGAGAGGAACCAAACCCCTGGAACTGTTCCAGTCATTCCTATAGTTGGTCTAGCAGGGATTGGCAAAACCACACTTGCCCAGTTAGCTTACAATGATGACATGGTGACTAGAGGTTTTGATTTGAAAATATGGGTATCTGTTAATGAAGATTTCTGTGTGAGGGACATCATAAGATCAATCATAGAATCTGTTACCAAAAAGGGGTGTGAAATTGCTGGTATGGATGTGCTTCAGTTTCAACTCAGAGATTTGTTGCAGCTGAGAAGATATTTTCTGGTGCTGGATGATGTGTGGAATGAAGATCATGATGAGTGGGATAAACTGAGAATACTCCTGAGTGGTTGTGCAGAAGGAAGCAGGATCATAATAACTACCCGCAGTGAAAAGGTTGCTTCAATAATGGGTACAGTTTCTCCTTATTGTTTAAAGAGTCTATCTGATGAAGATTGTTGGGAGTTGTTCAAGCAAAGGGCTTTTATCCATGGGGAAGAATGTGAACAAAAGCTTATGCCAATTGGGAAAGAGATTGTCAAGAAGTGTGGAGGTTTACCTTTGGCTGCAAAAACTTTGGGGAGTCTTATGCGCTTGAAAAGAGATGAAAGGGAATGGTTATATGTTAAGGAGAGTGAAGTGTGGAATGTGCTTAAAGGTGAGAATGGAATATTGCCAGCATTAAGGTTAAGTTACAGTCATTTGCCATCTCATCTGAAAGGATGCCTCATATACTGCTCAATATTTCCTAAAAATTATGTTATTGAGAAGAAGAAATTAATCCTAATGTGGATTGCACAAGGCTTGATTCAATCACCTGAAGGAGAAAAATCACTTGAAGACATTGGAGATGAGTATTTCAAGGAGTTAATGTGGATTTTTTTCTTTGAGGTTGTCAAAAGGAGTAGTGACAATGATGTAACAGAATGCAGATTACACAATCTTGTTCATGACCTTCTGCAACTGGTTGCTGGGAATGAATTTGTGATTATAGAATCTACCAGTTTGCCAAGATACCTTTCTCAAACTCGTCACGCATCTGTGGTTTCTGACTTTGGGGCACATGTCATTCCGGAGAATTTGTATGAGGCTAAGAAACTTAGAAGCCTTCATTTGCTTTTTTCTAAAGATCACCTTGGAGAAGGCCCTGCAAATTGGTTTTCAGAGTTTAAACATTTGCGCATGCTAAATTTGAGTGGCAGTGGCATTAAAAGGCTGCATGACTCAATTTCCTCTTTGATATCTTTAAGGTATCTTGATCTCTCACGCACCCCTATCGAGACATTGCCAGAGACTCTTTGTTACCATGCTAGTAAACTCGAAGTTTTAGATCTATCTGATTGCTGTGAACTCATTGAACTTCCCACGCGGTTGTGTAAACTATTCAATTTAAGGCACTTGATGATAGATGGTTGTCAGAGGCTGTCTCACATGCCAGAACATATAGAACAGCTGCCCAAGCTCCAAACACTACCAATGTTTATTGCAGGAACTGAGCCAAGTAAAAGCCTCACTCAATTGCAAAGACTGAAGCTGAAGGGTGAGTTACACATTAAGCAAATGGAGCATGTAAATAAGGCAAATGAGGCAAAACTAGCAAACTTAAGAGGGAAACGACAGCTCCATTCATTGAGTTTGTCATGGAAAAATTCTGATGAGTTTTGCGAGATGAATAGCAAAGAAGTTCTTGAGTGCATTGAACCACATCAAAATTTGAAGAGTTTGTGTATTGAAGGGTATCCAGGCATTTGCTTCCCAAGATGGATTGGTGTGGTTCAACTCCCTAACCTGACCAAGGTGGTGTTGATTAATTGCAGAAGATGTGAATATCTCCCCACACTGGGGGAATTTCCATTTTTGAAGGCTATTCACTTACAAGGAATGCATGGTGTGATCAACATTGGCAGGGAGTTCTATGGTGAGTGCTCAGGAAGGACATTCAAGTTGTTGCAAGAGCTATCCATTGTAGACTTTCCCAATTTGGAATTTTGGTGGAGTATGAATATTGGTGGAGAAGAATTTCCTTCCCTTGTCAAATTAACTGTCAAGAGATGTCCTAAGTTGAAAAACATGCCATCTGTTCAATCTCTTCAACATTTGGAATTGCGGAACTGTGATGAGATGACACTCTTATCAGCAAGCAATAGTACTTCCTCTCTTATCACCCTTGTTATAGATCAATTTACAGGGCAATTGGTTCATTTAGAAAGCTTACTCCAAAGCAATGCTTCTCTCACTTCTCTAACCATTAGCTCGTGTAGAAATCTTATCTCCATTCCGTCAACCTTAGGATGTTTGACTACACTTGAATCATTAGTAATTCGTTGGTGTGAAGAGCTCCATACCCTACCAGAAGATTTGCACAAGCTATCCTCATTAGAATACTTGGAGCTAAGCGAGTGTCATAACCTTGTTGCTTTGCCAGAAAGTATCCAAGGCTTACACAATCTCAGGTCCGTATCTGTTGAAAATTGCAATAGCATGTCATCTTTACCAACTGGACTGCAACACCTCACTGCTCTAGAGCACTTGGCCATAATGTATTGCCCAGTTTTGGATCATTTGCCAGATGAATTAAGTGACCTTTCCAAGCTAAGGAGTTTGTACCTCTTGAGCTGCCCAAAGCTGTCATTTCTTCCTGAAAGCCTGAAGCATTTGAAAGCTCTTCCAGGGTGGACTGAAAATCTTGTGTTTCTTCGTTCTTTGGTCATATCAGAATGTCATGGTATAGAATCACTTCCAGAAGGTTTGAAGCACTTGAGCAACCTTCAGCATTTATCAATACATGGATGTTCAGCTCTTGAGGAGGAATGTAGAAAAGGTGTTGGTAGAGAGTGGCCAAAGATAGCTCATATTCCACATACCTATGTTGGGAATTTGGAGCTTGGGAGATTTTCCACAGGGAGCAGCAGCAGCAGCTCCACTCATTAG

Protein Sequence

>Glyur003971s00040588.1
MADIVLCPLLQVVFERVTCHLLKLVAEACGFDDEIDKLKRALRHIQPLLEDAEQQQANNNNKALKSWLTELKGVAYDADDLLDEFCLKHSSDGLLPSRSGRSFHYHFVTNAVSSFKSYASYLELFPKLKNIRQNLDALVGEMSCFHLKEVSVATGWCCSLELGGRRQTGSFIINSEVYGREKDKGKILELILKKNERNQTPGTVPVIPIVGLAGIGKTTLAQLAYNDDMVTRGFDLKIWVSVNEDFCVRDIIRSIIESVTKKGCEIAGMDVLQFQLRDLLQLRRYFLVLDDVWNEDHDEWDKLRILLSGCAEGSRIIITTRSEKVASIMGTVSPYCLKSLSDEDCWELFKQRAFIHGEECEQKLMPIGKEIVKKCGGLPLAAKTLGSLMRLKRDEREWLYVKESEVWNVLKGENGILPALRLSYSHLPSHLKGCLIYCSIFPKNYVIEKKKLILMWIAQGLIQSPEGEKSLEDIGDEYFKELMWIFFFEVVKRSSDNDVTECRLHNLVHDLLQLVAGNEFVIIESTSLPRYLSQTRHASVVSDFGAHVIPENLYEAKKLRSLHLLFSKDHLGEGPANWFSEFKHLRMLNLSGSGIKRLHDSISSLISLRYLDLSRTPIETLPETLCYHASKLEVLDLSDCCELIELPTRLCKLFNLRHLMIDGCQRLSHMPEHIEQLPKLQTLPMFIAGTEPSKSLTQLQRLKLKGELHIKQMEHVNKANEAKLANLRGKRQLHSLSLSWKNSDEFCEMNSKEVLECIEPHQNLKSLCIEGYPGICFPRWIGVVQLPNLTKVVLINCRRCEYLPTLGEFPFLKAIHLQGMHGVINIGREFYGECSGRTFKLLQELSIVDFPNLEFWWSMNIGGEEFPSLVKLTVKRCPKLKNMPSVQSLQHLELRNCDEMTLLSASNSTSSLITLVIDQFTGQLVHLESLLQSNASLTSLTISSCRNLISIPSTLGCLTTLESLVIRWCEELHTLPEDLHKLSSLEYLELSECHNLVALPESIQGLHNLRSVSVENCNSMSSLPTGLQHLTALEHLAIMYCPVLDHLPDELSDLSKLRSLYLLSCPKLSFLPESLKHLKALPGWTENLVFLRSLVISECHGIESLPEGLKHLSNLQHLSIHGCSALEEECRKGVGREWPKIAHIPHTYVGNLELGRFSTGSSSSSSTH

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03971	12940	18338	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003971s00040588.1	PF00931.17	NB-ARC	202	464	5.60E-72
Glyur003971s00040588.1	PF12799.2	LRR_4	584	622	1.20E-08
Glyur003971s00040588.1	PF00560.28	LRR_1	631	652	0.91
Glyur003971s00040588.1	PF00560.28	LRR_1	984	1006	0.95

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.811
SRR1783600	control	0.787
SRR1783602	moderate drought stress	0.880
SRR1811619	moderate drought stress	0.874

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.194
DRR006520	Root Summer glycyrrhizin high producing strain	2.217
DRR006521	Root Winter glycyrrhizin high producing strain	0.923
DRR006522	Root Winter glycyrrhizin high producing strain	0.837
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.213
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.211

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.054
SRR2868004	Drought Stress (root)	0.025
SRR2967015	Control (root)	0.042

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.385
SRR9715740	Leaf	3.116
SRR9715741	Leaf	5.055
SRR9715739	Root	1.434
SRR9715742	Root	8.585
SRR9715743	Root	6.184

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.724
SRR8400027	Control - Root	2.770