Gene detail

Gene detail information of Glyur003971s00040586.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G32990.1	0	glycosyl hydrolase 9B8
NR	XP_003616918.1	0	Endoglucanase [Medicago truncatula]
COG	YP_007159459.1	4.00E-93	Cellulase [Anabaena cylindrica PCC 7122]
Swissprot	tr\|O48766\|GUN11_ARATH	0	Endoglucanase 11 (Precursor)
trEMBL	tr\|G7K7J2\|G7K7J2_MEDTR	0	Glycosyl hydrolase family 9 protein {ECO:0000313\|EMBL:AES99876.1}

Sequence

Transcript Sequence

>Glyur003971s00040586.1
ATGGAGGAAAACAGACAACAACATAAGAAACAACACCATTTTGGAGCTTCCAAAATCCCCATATTCTTGCAGCATTGTTGTCTTTGCTTCTTCATCTTCACCATCTTCACTACTACTACCACCACCACTACCATCCAAGCTTTTGATTATGCTGATGCCCTTTCAAAGAGCCTCCTCTACTTTGAAGCACAGCGTTCTGGGAGGATACCTTACAACCAGCGTGTCACTTGGCGTGACCATTCTGGCCTCACCGATGGCCTAGAACAAGGGGTGGATTTGGTTGGAGGGTATTACGATGCAGGTGATCATGTGAAGTTTGGTTTACCAATGGCATTCACTGTGACAATGCTCTCATGGGGTGCCATTGAATATTGGCAAGAAATTGCAGATGCAGGTGAATTGGAACACACAATGGAAGCAATCAAATGGGGCACTGATTACTTCATCAAAGCTCACACTAGCCCAAATGTGGGTGATGGTGACACTGACCATTATTGTTGGCAACGCCCAGAGGACATGACAACCTCAAGGAGAGCATTCAAGATAGATGAGAACAACCCTGGTTCAGATCTGGCTGGAGAAACAGCAGCAGCTATGGCAGCTGCATCCATAGTGTTCAAGAAAACAAACCCACATTACTCTCACTTACTTTTACACCATGCTCAGCAGTTGTTTGAGTTTGGAGACAAGTATAGAGGAAACTATGATGCTAGTGTTGGAGTAGTGAAGAACTACTATGCGTCGGTGAGTGGATACATGGATGAGCTGTTGTGGGCTGCCACGTGGCTGTACAAGGCCACCGACAAGGAAGAGTATTTTGAGTACATNATTTCCAAGGCTCATATCTTTGGTGGCACTGGTTGGTCCATATCAGAGTTCAGCTGGGACGTCAAGTATGCTGGCCTCCAAGTCATTGCCTCTAAGTTTCTAAACGAAGCAAAACACAAGAAGCATGGTGATACACTTGAACAATATAGATCAAAAGCAGAGTACTATATATGCTCATGTCTCAACAAAAACATCAATGGCAGCAATGTGGAAAGAACCCCAGCAGGGTTACTGTATATCCGACAGTGGAACAACATGCAGTACGTTTCAACAGCAGCATTTTTACTCACAGTGTACTCTGACTTTCTCAAAATCACAAACCAAAAGCTAAGATGCCATGGGGGCACTGTGGATCATGAAGAAATTCTCAGTTTTGCTAAATCACAAGTTGATTACATTTTGGGCCATAACCCAATGAACATGAGCTACTTAGTGGGCTATGGNCCNAGCTACCCAAAAAGGGTGCANCATAGAGGTGCATCCATAGTGTCATACAAGGAGAATAAAGGGTTCATAGGGTGTACTCAAGGGTATGATAATTGGTATAGTAGCCAAGCTCCTAATCCAAACGTTTTGGTTGGGGCTTTGGTTGGAGGGCCTGATTGGCAAGACAATTTTGAGGATCGAAGGAGCAACTATATGCAGACTGANGCATGNACATACAANACTTCCCCCTTAGTTGGTGTTTTTGCGAAGTTCTCGCATATAGAGAACCAAAAGATGGTTCATGATTGTAATTCACTTTTGGTTGCTTCCTTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03971	3094	7940	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH9

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003971s00040586.1	PF00759.14	Glyco_hydro_9	49	507	4.70E-156

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.395
SRR1783600	control	0.460
SRR1783602	moderate drought stress	0.495
SRR1811619	moderate drought stress	0.513

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.327
DRR006520	Root Summer glycyrrhizin high producing strain	1.482
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.613
DRR006524	Root Summer glycyrrhizin low producing strain	0.545
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.420
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.246

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.288
SRR2868004	Drought Stress (root)	0.503
SRR2967015	Control (root)	0.340

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.087
SRR9715740	Leaf	0.020
SRR9715741	Leaf	0.204
SRR9715739	Root	0.274
SRR9715742	Root	0.704
SRR9715743	Root	0.561

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.051
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.267
SRR8400027	Control - Root	1.756