Gene detail

Gene detail information of Glyur003963s00043022

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G19380.1	0	Long-chain fatty alcohol dehydrogenase family protein
NR	XP_003629014.1	0	GMC-type oxidoreductase, putative [Medicago truncatula]
COG	YP_003397164.1	3.00E-73	glucose-methanol-choline oxidoreductase [Conexibacter woesei DSM 14684]
Swissprot	tr\|O65709\|FAO4A_ARATH	0	Long-chain-alcohol oxidase FAO4A
trEMBL	tr\|G7L7T8\|G7L7T8_MEDTR	0	Long-chain-alcohol oxidase FAO1-like protein {ECO:0000313\|EMBL:AET03490.1}

Sequence

Transcript Sequence

>Glyur003963s00043022.1
ATGGAGAACATTAATGGGGAAAGCAACAACAGAAATGGTAACTNGAGGTTGGGGTTGGGAGTGAACGAAGTTCACACCTTTGTTGAGCTTGGTGGTGGTGAATATGTACTTGGTACTGGGAATGGTGAGGGGAGAGAGATCAAAGCAGAGCAAAACTCTCTGTCTCCTAGGCAGATGAAGTCCCTCGTTGCTCTCTGTGACACCATCTTACCTTCCATCAACGTTAACATCAACAACAACAACGTTGTTGGCTCCGACGACCACGAATCTGTCGCCAACTTCTACCGTACTTCATCTTCCATGGCTGGCACTCCTGAACGTCTTGGGATTTTGATAAGTGGGAAACTGAAACACCCGAGTAGAAGGTTATTGTTGGTGACGTTATGGATGTTGTCCACATGGTTTGGCACATTGATGCTGTGTGGCATGGCGAGCCTCTCGACAAGGTTCCCCTTCTTCCGCAGCTACCCCGAACTGTCTCCGGAGAAACGNCAAAAAGTGATGCAGTCTTGGTCTCTCAGTAACTTTCGTCTCCTTAGGATGTTTTTCAGGACCATCAAGCTTCTCACACTCCTTGTCTTCTTCACTCAGAACCATGTACTCATTATGCCAAAACTCTTCCGTTTTCAGCTAGATGAAGCAAAAGACAACCCATCATGGAAGGCAATTGGATATAGCGGATCTGATCCAGAGTTCAAAGCACAACTAAAGAACCACCTTTTACATAGAACNTTAAAAGGAGGAGAACAAGAGGAAAAAGAAGAAGATGATGATGATGCAGAAGAGGTTATAGGACCTCTTCACAAAGGTCTTGTCCATCTNAACTTCCCAAGAGACATCATTGCAGATTCTCTAAGAAGACATGGATTCCCTGTCTCTATCACTCCTCGAAAGAATAAAGCGTCTAACATCTCATCACCTTCTCTAGTTATCCAATGTGATGCGGTGGTTGTTGGTTCTGGTTCTGGAGGTGGGGTGGTAGCTGGAGTTCTAGCAAAAGGTGGTCATAAAGTGCTGGTCTTGGAGAAAGGAAGCTACTTTGCTAGGAACAATCTTTCCCTTCTTGAAGGACCAACCTTGGATCAAATGTACCTCTCTAGCGGTTTGATTGCAACAGATGATCTGTCTGTACTAATACTAGCAGGATCCACAGTTGGTGGAGGGTCTGCAGTCAACTGGTCAGCCAGCATCAAAACCCCTCAGCATGTATGCAAGGAGTGGTGTGACCTCCATGAGCTAGAACTATTTGAGAGCAAGCTATACAAAGAGGCCATGGATGCTGTGTGTGGGAGAATGGGAGTCCAATCTGAGATTGGGGAGGAAGGGTTTAACAATGCAGTCCTAAGGAGAGGGTGTCAAGAAATGGGGTATCCNGTGAGTAATATTCCTAGGAATGCTCCACCAGATCACTACTGTGGCTGGTGTTGCATGGGATGCAAGGATGGAAGGAAAAAAGGTACATCAGAAACATGGCTGGTGGACTTGGTGAAATCAGGCAATGGAGCAATTCTTCCTAGTTGTGAGGCTATACAAGTCTTGCACAAAAAAGTGAAAGGGAGAGACAGAAAAATAGCATGTGGAGTGGCTTTTGCAATTGACTACAAGGGAAACAAAGACATCTGTGTGGTGGAGTCCAAGGTCACAATTGTAGCCTGTGGAGCACTCGGTACTCCAACATTACTTAAAAGAAGTGGCTTGAAGAATGAGAACATAGGGAGACACTTGCATCTTCATCCAGTTACAATGGCTTGGGGATACTTCCCTGATGCNCCTGAGTTGTGGCCAGAGGAACATAAAAAGAGCTATGAAGGAGGGATTATGACAGCAATGTCTACAGTTGTTGCAGAGTTTAACAAATCCGGATATGGTGCAGTGATCCAAACACCTTCATTGCACCCGGGCATGTTCTCAGCTCTAATGCCATGGGTTTCCGGGATTGATATAAAAGATCGAATGCGNAGGTTTTCCAGAACAGCTCATGTATTTGCACTGGCAAGGGATCAAGGANCAGGAACTNTGAACTCACCTAGCTGTATAAGTTACCAGATAGATGATGTAGACAAAGAGAATTTAAAGAAAGGAATTGAGAAGGTGCTGAGAATTCTGGCAGCAGCTGGAGCTGAAGANATTGGGACACATAATAACAAGGGAAGGAGCATAAATGTCAAGCAGGTGAGCTATCATGAATTTGAGAAATTTGTGGAAGAAGAAAGCTCAATGCCTTTAACAGACCTTTCAACACCATTATGCTCAGCACATCAGATGGGGAGTTGTCGTATGGGTACTAATCCGAAGGAATCGGTTGTGAACCAAATGGGGGAGACATGGGAAGTGGAGAGTCTTTATGTGGCAGATGCAAGTGTCTTTCCCACAGCTTTGGGTGTGAATCCAATGGTCACTGTTCAGGCTATTGCTTACTGCACAGCACAACATGTCCTTGAAGTTCTTAGAAGGAAAAGAAGAAAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03963	10669	16501	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0046577 long-chain-alcohol oxidase activity

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003963s00043022.1	PF00732.14	GMC_oxred_N	314	580	9.10E-60
Glyur003963s00043022.1	PF05199.8	GMC_oxred_C	679	806	4.00E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.362
SRR1783600	control	1.351
SRR1783602	moderate drought stress	1.892
SRR1811619	moderate drought stress	1.925

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.186
DRR006520	Root Summer glycyrrhizin high producing strain	0.157
DRR006521	Root Winter glycyrrhizin high producing strain	1.478
DRR006522	Root Winter glycyrrhizin high producing strain	1.463
DRR006523	Root Summer glycyrrhizin low producing strain	0.535
DRR006524	Root Summer glycyrrhizin low producing strain	0.570
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.793
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.762

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.014
SRR2868004	Drought Stress (root)	2.001
SRR2967015	Control (root)	1.766

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.605
SRR9715740	Leaf	0.453
SRR9715741	Leaf	0.630
SRR9715739	Root	0.214
SRR9715742	Root	0.878
SRR9715743	Root	0.839

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.611
SRR8749028	MeJA induced 9h	49.881
SRR8749029	MeJA induced 9h	20.559
SRR8749030	Uninduced	2.257
SRR8749031	Uninduced	1.329
SRR8749032	Uninduced	1.091

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.230
SRR8400027	Control - Root	1.755