Gene detail

Gene detail information of Glyur003959s00041120.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G49880.1	0	glycosyl hydrolase family protein 43
NR	XP_006573666.1	0	PREDICTED: uncharacterized protein LOC100775557 [Glycine max]
COG	NP_812596.1	1.00E-114	hypothetical protein BT_3685 [Bacteroides thetaiotaomicron VPI-5482]
trEMBL	tr\|I1J9E8\|I1J9E8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G40190.1}

Sequence

Transcript Sequence

>Glyur003959s00041120.1
CAAATCAATGTCATCAACCTCAGANCCAGATCCAAGCGGCACCGGAACTTAACTACCCATACCCAAACACAACCATCTGATTAATTTTCTTTAATTTTCCTTCTCTCTCTCCCTTATTACCTCGTATTTGGACTCAGCTTAGTTCGGTGGTTGTGTTTGTGCCACTGGCGTTGAACAAAACCGCATGTCGGGGAGTTCTGCTCATTCCTTAGTTCGGGTGGTACCAGATAAAAAGGAAGAGAAAATGAGGATGAGGAACAAATACAGGAAACCAACAACTTTACTACGTTGCAATGCAGGGAGCAGATGTTCTTCTACGTATGTTTTGGTACTGAGCTTGTTAGGATGCCTTCTTTTGCTTCATTTGTATTCCTATATTCATCACACAGACAGACCTGGTGGAGAGCCTCGATTGCGCGTGACTCATCATCCCCAGTTCCGTGAACTTCAAGAGGTGGAAGAGGAAAACATTCAGATTCCCCCACCGAGAAAGAGGTCCCCCCGGGCAGCAAAACGCAAACCTAAACGGGCAACTACACTGATTGATGAATTCTTGGATGAAAATTCCCAACTGAGACATGTGTTTTTTCCTGGTTATAAAAGAGCTGTAGATCCAATGCAGCCTGATACAAATGATGATAAGTATTACTACTACCCTGGGAGAACTTGGTTGGATACGGATGGAAATCCTATACAAGCCCATGGAGGGGGCATACTGTATGATGAAAATTCCAGAACATACTATTGGTATGGTGAATATAAAGATGGACCCACCTACCATGCTCACAAGAAAGGAGCTGCTCGGGTGGACATTATTGGAGTTGGTTGTTATTCTTCTAAGGATTTGTGGACCTGGAAACATGAGGGGATTGTATTGGCAGCAGAGGAAACAAATGAAACCCATGACCTGCACAAGTCTAATGTGCTAGAGAGGCCAAAAGTGATTTACAATGGTAAGACTGGAAAGTATGTGATGTGGATGCATATTGATGATGCTAACTATACCAAAGCAGCTGCTGGCGTAGCAATCAGTGATACACCTGATGGTCCTTTTAATTATCTCNGTAGCCAAAGGCCCCATGGATATGAAAGCAGGGATATGACAGTTTTCAAAGACGATGATGGTNTGGCATATCTAATCTACTCCTCCGAAGACAACAGTGAACTGCACATCGGACCCCTTACCGAAGATTATCTCAATGTGACATCTGTCATGAGAAGGATTCTTGTGGGACAGCACAGAGAAGCACCGGCCCTGTTCAAGCATCAGGGCACATACTACATGATCACATCGGGGTGCACGGGATGGGCCCCAAACGAGGCACTGNCTCATGCTGCTGAGTCAATCTTGGGGCCTTGGGAAACAATGGGAAATCCATGCATGGGAGGAAACAAAATGTATCGACTCACAACCTTCTTTGCTCAGAGCACTTTTGTGCTTCCTATTCCTGGCTACCCAGGTTCATTTATTTTCATGGCGGATCGGTGGAATCCAGCTGACTTAAAGGACTCGAGGTATGTATGGTTGCCTTTGATAGTGGCAGGACCTGCTGATCAGCCTCTGGAGTATAGTTTTGAATTCCCATTGTGGTCAAGAGTGTCTATCTATTGGCATAGAAAATGGAGACTGCCTCAGGGGTGGAACGCCTCCAAATAAAGAGGTTCTCTTTGTACATTCAATATCATGTCATGATCATATACAAAAGACTCAGGTATATATCTTACCGTGTTGCTTGTCAAGCACTTGTTGGAAAGTTCGTGCACTACTCACAGAAACGAACATAGAAGCATAAGTCTCAATAACATGCAGCCGTCTTGACAGTTGACACCTCATAAATCTAGGATAAGTTGAGATTAATTTGAGGGAGCATACGTGTATGGAGAAAGATTATNCACTTGATTGGAATTTTGCCAATACTCCAGCATTGTTGATCAGTTGTGCCACGGCATTATGTGTAAATTAGTTATGTAAAATGATTCTTTCATGTGTGTACTTTACGTTGTTTTTTTTTTGCTGGTCCTTTGATTACCGGCTACACCATATGGAATTGCTACACATGCATCGATTAAGTGATAAGTTGGTCATTATGTGCATCATGTATTCGGGCTCAGTTAGTTACTTTTACAAGAAAGGAGAGATTTTTGGGTGACTAGGGTGCACAATCAGTTTGTGCATAACATTAGGAACAATAAGAACATGCTGTTGGTTTCGCAAAAGCGACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03959	9917	13800	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003959s00041120.1	PF04616.9	Glyco_hydro_43	211	395	6.50E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.617
SRR1783600	control	11.644
SRR1783602	moderate drought stress	13.493
SRR1811619	moderate drought stress	13.400

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.528
DRR006520	Root Summer glycyrrhizin high producing strain	15.230
DRR006521	Root Winter glycyrrhizin high producing strain	18.461
DRR006522	Root Winter glycyrrhizin high producing strain	18.310
DRR006523	Root Summer glycyrrhizin low producing strain	18.165
DRR006524	Root Summer glycyrrhizin low producing strain	18.421
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.020
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.738

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.033
SRR2868004	Drought Stress (root)	22.186
SRR2967015	Control (root)	22.206

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.609
SRR9715740	Leaf	11.133
SRR9715741	Leaf	10.048
SRR9715739	Root	5.071
SRR9715742	Root	13.465
SRR9715743	Root	10.984

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.059
SRR8749028	MeJA induced 9h	15.245
SRR8749029	MeJA induced 9h	6.191
SRR8749030	Uninduced	3.612
SRR8749031	Uninduced	2.121
SRR8749032	Uninduced	1.724

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.841
SRR8400027	Control - Root	17.238