Gene detail

Gene detail information of Glyur003951s00041902

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G59650.1	4.00E-157	Protein of unknown function (DUF1336)
NR	XP_003517757.1	0	PREDICTED: uncharacterized protein LOC100787325 isoform X1 [Glycine max]
trEMBL	tr\|I1J5H8\|I1J5H8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G04630.1}

Sequence

Transcript Sequence

>Glyur003951s00041902.1
ATGGGGGCGTGTGTGTCAACAAGTCAAGGATGTAGAAGAGGGAGGTTAAGCTCCTCCAAGAACAAGAAGAAGAGTGGTATGAGGAGGAGATATAGACTCAGAAGAAGAGTGTCTTCTCAGTTGGACAATGGGTCATTGGACAAGGGTGATATGCCTGATGAGAGTTCCTTTGNCAACCCCACTTTCCAAGGANCTATTGAGGAGGCATGGTTTGATTCAGTTGCAGTATTTGACTCTGACTGTGATGATGACTACCAGAGTGTTCCTGATGACTTGGTATCTCTTAATGGGTTTGAAGCAAACCATGGAATTTCAACTGCAACAGGATATTCTACACATATCTCTGAGGTTGGTAGAAGTTCAGACGCTCAGTTTTTCGATGTAGATGTCATGGATTCGCAATGTAGACGCGATGGAAGTATAAATGAAGTAAATGAACCTGTTTATCTTGATGAATTCTCCTCNGTGGATGCAAACTCCAACAAGGGTGATGGACTTTTGGACAACTGTGGGATTCTTCCAAGCAATTGTTTGCCATGTCTTGCATCTACTATTCCTTCTATTGAAAGAAAGAGACCATCAAGTTCTAGTCCTCCTAATAATGCAAGCAAGAAGGCTCTCACAAAACTTCCCTTTAAAGGGAGGGAAGGGCATGGGCATGCNACTCTATTTTCCTCGAAGACACTTCTACAAAGACCAATTGCAGGTTCCCAGGTACCCTTTTGTCCAATTGAGAAGAAAATGCTTGATTGTTGGTCAAACATTGAACCAAGCACTTTTAAAGTTCGAGGAGTAAATTATTTGAAGGACAAGAAAAAAGACTTTGCTTCAAACAATTGTGCGTATTACCCATTTGGTGTAGATGTATTCTTATCTCCACGAAAAGTAGACCATATAGCTCAGTTTGTGGAACTTCCTGTTATTAATTCTTCTGGGAAACTTCCACCTATACTTGTTGTAAATGTTCAGATTCCGCTTTACCCGGCCGCACTTTTTCAAGGTGAGACTGATGGGGAAGGAATGAGTTTTGTGTTGTACTTCAAACTGTCTGAAAGTTACTCCAAGGAACTTCCACTGCATTTTCAAGAAAACATAAGAGTAAAGGGTTTTCCNGTAGATACAATTGTACCCTTCAGGGAAAGGTTGAAAATATTGGGCCGTGTGGTCAACCTGGAAGATCTTCATTTGAGTGCAGCAGAACGGAAGGTTATGCAGGCTTACAATGAGAAACCTGTTCTTTCACGTCCGCAACATGAGTTTTACATAGGAGAAAATTACTTTGAGATTGATTTGGATATGCATAGATTCAGTTATATCTCTAGGAAAGGTTTTGAAGCTTTCATGGAGAGATTAAAGATCTGTATTCTAGATGGGAACAAAGCAGAGGAGCTGCCAGAGCAGGTCTTATGTTGTATCAGGCTAAACGGCATTGATTACATGAATTACCAACAATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03951	3346	8538	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003951s00041902.1	PF07059.7	DUF1336	252	478	4.50E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.180
SRR1783600	control	3.199
SRR1783602	moderate drought stress	2.194
SRR1811619	moderate drought stress	2.207

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.714
DRR006520	Root Summer glycyrrhizin high producing strain	6.779
DRR006521	Root Winter glycyrrhizin high producing strain	0.083
DRR006522	Root Winter glycyrrhizin high producing strain	0.108
DRR006523	Root Summer glycyrrhizin low producing strain	0.962
DRR006524	Root Summer glycyrrhizin low producing strain	0.840
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.224
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.251

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.827
SRR2868004	Drought Stress (root)	5.883
SRR2967015	Control (root)	6.862

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.005
SRR9715740	Leaf	2.860
SRR9715741	Leaf	1.527
SRR9715739	Root	1.568
SRR9715742	Root	1.687
SRR9715743	Root	1.326

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.431
SRR8749028	MeJA induced 9h	1.610
SRR8749029	MeJA induced 9h	1.144
SRR8749030	Uninduced	1.158
SRR8749031	Uninduced	1.164
SRR8749032	Uninduced	0.384

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.061
SRR8400027	Control - Root	26.621