Gene detail

Gene detail information of Glyur003946s00040537

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G09750.1	2.00E-156	NAD(P)-binding Rossmann-fold superfamily protein
NR	KHN00730.1	0	Dehydrogenase/reductase SDR family member 12 [Glycine soja]
COG	YP_007542865.1	1.00E-61	hypothetical protein C427_1408 [Glaciecola psychrophila 170]
Swissprot	tr\|Q42536\|PORA_ARATH	2.00E-16	Protochlorophyllide reductase A, chloroplastic (Precursor)
trEMBL	tr\|I1JDB5\|I1JDB5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G08610.1}

Sequence

Transcript Sequence

>Glyur003946s00040537.1
TAACATAACAGGCACGGCACAGTGAATGGGAAGAGAAGGAGTGGTAGGACTGCAACTGCAACTGCAACTTCACTTCTCCGTCATAACTCTCACTATGTTCCTTCTCAAGGCATGGAGACAAACGGCTTTTGGTGTTTATGGTTACCTCAATTTCACCAAAGCTGGTTTCCTTGATCATTCTAAGAAATTCAAACCAGAGGAAATNGAAACACAAATACCAGGGAAGAATTGCATTGTTACAGGAGCTAACTCTGGAATTGGTTATGCAACAGCTCAGGGTCTTGCACAGTGTGGTGCAACCGTCTATCTTGTGTGTCGCAATAAGGAGAGAGGAGAGGCTGCTGTTTCTGAAATTCAATCTAAAACAGGCAATCAAAATGTATATTTGGAGATTTGTGACCTGTCATCTGTCTCGGAGATCAAGTCATTCACTNCCAGGTTTTCCAAAAAGAATGCACCAGTACATGTGTTGGTTAACAATGCAGGCTTGCTTGAGCAAAATCGAGTGACCACATCAGAAGGGTTTGAGATGAACTTTGCTGTTAATGTATTAGGCACTTACACCATGACAGAATTGATGGTACCATTGCTGGAGAAAGCTTCCCCTGATGCACGTGTCATTACAGTTTCTTCTGGTGGAATGTATACTACTCCCTTGACCAAAGATTTTCAGTATTCTGAGAGCAACTTTAATGGGGTTGAACAGTATGCTCGAAACAAGCGTGCTCAGGTTGCACTAACAGAAAAGTGGGCTGAGACATATAAGAACAAAGGGATAGGATTTTACTCAATGCACCCAGGTTGGGCTGAGACTCCTGGGGTTGCAAAAAGTTTGCCAAGCTTCTCTGAAAAGCTTTCGGGGAAGCTTAGAACAAGTGAAGAAGGTGCAGACACAGTTATCTGGTTGGCTTTACAACCAAAGGAGAAGCTGGTATCAGGTGCATTCTATTTTGATAGAGCTGAAGCTCCGAAGCACCTTCATTTTGCAGCTACCGGTGGTTCTCATGCTTTGATCGATTCTGTCGTTGATAGTCTTCATTCCATGNCATCTCTTTCCGTTTAAATAGGTAGAGTACTTTGTTTGTTGTACATTAAAAGTAAACCTTAAAAGTTGTAATTAATCATAGAACCTTGTTGGGAAGCAATATAGCATCAAGCTCGCTAAATAGTCCCTGGAAATGTAGGTATGACTGTTCAATTTGGGATGCATTCCAAATGAAATGATTACTTTTCACTTCATATAATGTATCTTATTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03946	3067	8658	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003946s00040537.1	PF00106.20	adh_short	68	221	2.40E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.116
SRR1783600	control	0.117
SRR1783602	moderate drought stress	0.090
SRR1811619	moderate drought stress	0.089

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.088
DRR006522	Root Winter glycyrrhizin high producing strain	0.086
DRR006523	Root Summer glycyrrhizin low producing strain	0.263
DRR006524	Root Summer glycyrrhizin low producing strain	0.246
DRR006525	Leaf Summer glycyrrhizin high producing strain	55.921
DRR006526	Leaf Summer glycyrrhizin high producing strain	55.381

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.441
SRR2868004	Drought Stress (root)	18.399
SRR2967015	Control (root)	12.646

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	48.410
SRR9715740	Leaf	70.594
SRR9715741	Leaf	67.659
SRR9715739	Root	0.141
SRR9715742	Root	1.711
SRR9715743	Root	1.060

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.640
SRR8749028	MeJA induced 9h	4.839
SRR8749029	MeJA induced 9h	2.695
SRR8749030	Uninduced	1.802
SRR8749031	Uninduced	0.821
SRR8749032	Uninduced	1.028

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.233
SRR8400027	Control - Root	7.490