Gene detail information of Glyur003930s00046224 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G10070.1 | 4.00E-06 | TBP-associated factor 12 |
| NR | XP_007145316.1 | 2.13E-08 | hypothetical protein PHAVU_007G228800g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SR71|TAF12_ARATH | 7.00E-07 | Transcription initiation factor TFIID subunit 12 |
| trEMBL | tr|V7BJT6|V7BJT6_PHAVU | 8.00E-09 | Uncharacterized protein {ECO:0000313|EMBL:ESW17310.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03930 | 5410 | 8580 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003930s00046224.1 | PF03847.8 | TFIID_20kDa | 27 | 62 | 8.00E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.234 |
| SRR1783600 | control | 2.018 |
| SRR1783602 | moderate drought stress | 4.779 |
| SRR1811619 | moderate drought stress | 5.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.735 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.063 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.450 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.928 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.916 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.736 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.025 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.399 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.413 |
| SRR2868004 | Drought Stress (root) | 5.412 |
| SRR2967015 | Control (root) | 4.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 3.779 |
| SRR9715741 | Leaf | 0.003 |
| SRR9715739 | Root | 1.442 |
| SRR9715742 | Root | 0.070 |
| SRR9715743 | Root | 0.850 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.737 |
| SRR8749028 | MeJA induced 9h | 7.483 |
| SRR8749029 | MeJA induced 9h | 12.872 |
| SRR8749030 | Uninduced | 10.644 |
| SRR8749031 | Uninduced | 8.703 |
| SRR8749032 | Uninduced | 10.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.915 |
| SRR8400027 | Control - Root | 1.081 |