Gene detail information of Glyur003924s00044061 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G06040.1 | 4.00E-05 | B-box zinc finger family protein |
| NR | KEH36609.1 | 5.80E-10 | LRR receptor-like kinase [Medicago truncatula] |
| Swissprot | tr|Q96288|BBX24_ARATH | 9.00E-06 | B-box zinc finger protein 24 {ECO:0000303|PubMed:19920209} |
| trEMBL | tr|A0A072V5H5|A0A072V5H5_MEDTR | 2.00E-10 | LRR receptor-like kinase {ECO:0000313|EMBL:KEH36613.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03924 | 16222 | 18697 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003924s00044061.1 | PF08263.7 | LRRNT_2 | 111 | 142 | 4.70E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.462 |
| SRR1783600 | control | 2.178 |
| SRR1783602 | moderate drought stress | 5.448 |
| SRR1811619 | moderate drought stress | 6.368 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.414 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.292 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.093 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.328 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.464 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.593 |
| SRR2868004 | Drought Stress (root) | 0.862 |
| SRR2967015 | Control (root) | 0.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.261 |
| SRR9715740 | Leaf | 0.191 |
| SRR9715741 | Leaf | 0.185 |
| SRR9715739 | Root | 0.045 |
| SRR9715742 | Root | 0.082 |
| SRR9715743 | Root | 0.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.106 |
| SRR8749028 | MeJA induced 9h | 2.442 |
| SRR8749029 | MeJA induced 9h | 1.258 |
| SRR8749030 | Uninduced | 2.358 |
| SRR8749031 | Uninduced | 3.160 |
| SRR8749032 | Uninduced | 2.003 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.782 |
| SRR8400027 | Control - Root | 1.530 |