Gene detail information of Glyur003924s00044060 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G19720.1 | 4.00E-04 | Glycosyl hydrolase family protein with chitinase insertion domain |
| NR | XP_004488666.1 | 6.38E-83 | PREDICTED: chitinase 2-like [Cicer arietinum] |
| Swissprot | tr|Q7M443|CHIT2_TULBA | 9.00E-39 | Chitinase 2 |
| trEMBL | tr|A0A072TEX8|A0A072TEX8_MEDTR | 2.00E-77 | Glycoside hydrolase family 18 protein {ECO:0000313|EMBL:KEH15912.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03924 | 9081 | 9968 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003924s00044060.1 | PF00704.23 | Glyco_hydro_18 | 18 | 207 | 9.00E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.135 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.096 |
| SRR2868004 | Drought Stress (root) | 0.063 |
| SRR2967015 | Control (root) | 0.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 875.874 |
| SRR9715740 | Leaf | 4578.664 |
| SRR9715741 | Leaf | 242.670 |
| SRR9715739 | Root | 0.241 |
| SRR9715742 | Root | 0.399 |
| SRR9715743 | Root | 0.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.041 |
| SRR8400027 | Control - Root | 0.038 |