Gene detail information of Glyur003916s00044185 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G09730.1 | 4.00E-26 | RH39 |
| NR | XP_003519974.1 | 9.21E-105 | PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Glycine max] |
| COG | NP_602766.1 | 1.00E-09 | ATP-dependent RNA helicase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] |
| Swissprot | tr|Q56X76|RH39_ARATH | 9.00E-29 | DEAD-box ATP-dependent RNA helicase 39 |
| trEMBL | tr|I1JDA5|I1JDA5_SOYBN | 3.00E-105 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G08510.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03916 | 4392 | 7674 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003916s00044185.1 | PF00270.24 | DEAD | 69 | 170 | 3.90E-07 |
| Glyur003916s00044185.1 | PF00658.13 | PABP | 173 | 224 | 4.00E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.380 |
| SRR1783600 | control | 0.387 |
| SRR1783602 | moderate drought stress | 1.994 |
| SRR1811619 | moderate drought stress | 2.293 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.241 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.403 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.308 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.751 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.604 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.559 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.930 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.947 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.118 |
| SRR2868004 | Drought Stress (root) | 4.347 |
| SRR2967015 | Control (root) | 4.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.182 |
| SRR9715740 | Leaf | 5.509 |
| SRR9715741 | Leaf | 4.276 |
| SRR9715739 | Root | 1.186 |
| SRR9715742 | Root | 2.335 |
| SRR9715743 | Root | 2.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.380 |
| SRR8749028 | MeJA induced 9h | 1.778 |
| SRR8749029 | MeJA induced 9h | 0.625 |
| SRR8749030 | Uninduced | 0.744 |
| SRR8749031 | Uninduced | 0.394 |
| SRR8749032 | Uninduced | 0.161 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.340 |
| SRR8400027 | Control - Root | 3.131 |