Gene detail information of Glyur003892s00047922 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G59320.1 | 6.00E-12 | lipid transfer protein 3 |
| NR | AII99870.1 | 1.04E-37 | protease inhibitor/seed storage/ltp family [Cicer arietinum] |
| Swissprot | tr|O23758|NLTP_CICAR | 2.00E-37 | Non-specific lipid-transfer protein (Precursor) |
| trEMBL | tr|A0A076KXC0|A0A076KXC0_CICAR | 4.00E-38 | Non-specific lipid-transfer protein {ECO:0000256|RuleBase:RU000628} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03892 | 11616 | 11987 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003892s00047922.1 | PF00234.17 | Tryp_alpha_amyl | 27 | 103 | 1.90E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.809 |
| SRR1783600 | control | 8.384 |
| SRR1783602 | moderate drought stress | 19.129 |
| SRR1811619 | moderate drought stress | 18.913 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.292 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.145 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 46.139 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 42.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.457 |
| SRR2868004 | Drought Stress (root) | 8.440 |
| SRR2967015 | Control (root) | 7.225 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 208.922 |
| SRR9715740 | Leaf | 45.616 |
| SRR9715741 | Leaf | 67.240 |
| SRR9715739 | Root | 80.807 |
| SRR9715742 | Root | 34.731 |
| SRR9715743 | Root | 37.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 43.273 |
| SRR8400027 | Control - Root | 37.875 |