Gene detail

Gene detail information of Glyur003890s00045987

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G09140.2	4.00E-48	Protein of unknown function (DUF674)
NR	KEH28932.1	0	DUF674 family protein [Medicago truncatula]
trEMBL	tr\|A0A072UGZ2\|A0A072UGZ2_MEDTR	0	DUF674 family protein {ECO:0000313\|EMBL:KEH28932.1}

Sequence

Transcript Sequence

>Glyur003890s00045987.1
GCCTGTGAAAGATTCATTACTCCCACTGCACCTCTTTGTGTCATTGTGATTAGTTACCCCATTTTTGTAGGTTCTGCTACGTGCCATGGCTGCTGAACAGCAACAAGAAGAAGAACTAAAAACATTTCCCCTCAAAATCATGGTGGACAAACAAAGCAACAAAGTTGTTGTTGTGGAAGCAACAAAGGACTTCGTCGACACTCTCTTTAGCTTCCTATCCCTCCCACTCGGCACCGTCATTCGCCTTGTTACCACCACCACCGCCAACAACAACAACAATGATGATCAACAACAACCACCCCTTTCAGAGGAGTCATCACCACCACTCCTTAACGGCATCACCAACCTCTACCAAAGCGTGCAAAGCCTCACCCCAAATGATGTTTGGAACCCTGTTTGCCAGCAAATGTTGCTGCACCCAAGGAACCCCATTGAGGCATTGTGCTGTAACCTATTCCTAAATGTTGATGACTCCGCAGAGCCCACGAGAAGGTTTTTTGTGTGTGATTCTTGTTACAAGTTCACCACATTCCCCAACATGGTATGCACCTGTGGGAAACCCGTTAACAAACAGCCTCGGAATTTGGACGAGGGTCAGGAGAATAGTAGAATTGCGGAAGCCACCAAAGGTGGAGTCTTTGTGCATGGGTCGTCAATGTTTCTGGTCTTTGATGATTTGAAGGTTTTTCGTAGTTCCTTGGTGACATACACGCAGCAGCTGCAGCAACTGGGATATTCAGACTTGACTCAACTAGAGGAAGTGACACAGAACATTGGCAAGCAGGAGATATTGAACCTCCTCAAGTATAGCTTAACCTCTCATGAGCCTCTGACCAACACAATTTTGGCTAGTAGCTCCAAGAACAAAGGCAACCCACCAAACCAGTTTGCATCAGCAATCAAAGTGAGTCCTTGCACCACTGACAGAAAAATGGATGTTAAGCTAATGCGAAGCAAATCTCAGAAAAAGATCGTTTTTGCAGAAGCCAATGGAGATTTTGTTGACTTCATGTTTAGCTTTCTTACTGTGCCATTGAGGTCCATTGTAAAGCTTTTGGGTGCTAACTCTTTTGTTGGATGTGTTGATAATTTGTACAAGAGTGTAGAGACCATGGAGTCTTCATGGTGTACGGATTCACGCACTGTGTTACTCAATCCTGGTGTAGCACCACAGTTTGGTTGTCCAAACCNNCCCCTCNACCTCAACATTCCTGATGTAGAAGTAGAGCTCCCTACATATTATTATGGTATAGGGACACCAAAGAGATTTTTTGATTATGATTATTATTGTTATCGCACAACAGCAGAAACCATAGAGGGAGGAGTGATTTCAAAGTTACAGGGATCAATTTATGAAGCAAGNCCGTTGACTGAACTGGACCCAAGATCCCCCGATAGTTCGAAAGAAGGTGTTGTGGGATTTGTGAAGAGACCAGCATTATATGGTGTGGGAGATGATCTAAAAGTGAAACCACTGTCTGCTATTTCTTGCCATTCCTATTTGAAAGAATTAAGCCTTCCCCTTGATGATCTTGAAGTGATGAAGGTGATAAGCATCGGAGAAGCAGAGGCTTTAAGTCTCCTTCGAGCTTCATTCACATCAAAATTTACCCTGACTAGTGGACTGGAAGACTTTTCGAATGTGCCAAAACAAGAACCAACTCTGGCATCAAAATACACACAAACTATTGAGCTACTTGATCTTTCAGAGGAGCCTAAACCAGAAGCCTGAATTATCCATCAGTTGCAGTTTCAACCTGTGTTTTGAACAAGGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03890	16860	19498	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003890s00045987.1	PF05056.7	DUF674	8	495	1.90E-79

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.173
SRR1783600	control	0.143
SRR1783602	moderate drought stress	0.147
SRR1811619	moderate drought stress	0.186

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.784
DRR006520	Root Summer glycyrrhizin high producing strain	5.182
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	6.763
DRR006524	Root Summer glycyrrhizin low producing strain	7.017
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.283
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.055

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.814
SRR2868004	Drought Stress (root)	3.963
SRR2967015	Control (root)	3.454

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.018
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.069
SRR9715743	Root	0.066

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.847
SRR8749028	MeJA induced 9h	0.019
SRR8749029	MeJA induced 9h	0.272
SRR8749030	Uninduced	0.071
SRR8749031	Uninduced	0.083
SRR8749032	Uninduced	0.064

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.115
SRR8400027	Control - Root	0.230