Gene detail information of Glyur003888s00041508 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G28190.2 | 4.00E-31 | Developmental regulator, ULTRAPETALA |
| NR | XP_002517976.1 | 6.37E-48 | Protein ULTRAPETALA1, putative [Ricinus communis] |
| COG | YP_007059976.1 | 3.00E-07 | DhnA-type fructose-1,6-bisphosphate aldolase-like enzyme [Synechococcus sp. PCC 6312] |
| Swissprot | tr|Q8GZA8|ULT1_ARATH | 4.00E-37 | Protein ULTRAPETALA 1 |
| trEMBL | tr|B9RW57|B9RW57_RICCO | 2.00E-48 | Protein ULTRAPETALA1, putative {ECO:0000313|EMBL:EEF44494.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03888 | 5508 | 6505 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003888s00041508.1 | PF04481.7 | DUF561 | 99 | 134 | 3.20E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.293 |
| SRR1783600 | control | 3.346 |
| SRR1783602 | moderate drought stress | 2.741 |
| SRR1811619 | moderate drought stress | 3.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.105 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.223 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.472 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.233 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.523 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.099 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.777 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.788 |
| SRR2868004 | Drought Stress (root) | 6.805 |
| SRR2967015 | Control (root) | 7.982 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.180 |
| SRR9715740 | Leaf | 7.984 |
| SRR9715741 | Leaf | 8.772 |
| SRR9715739 | Root | 2.666 |
| SRR9715742 | Root | 3.130 |
| SRR9715743 | Root | 3.233 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.654 |
| SRR8749028 | MeJA induced 9h | 3.947 |
| SRR8749029 | MeJA induced 9h | 1.774 |
| SRR8749030 | Uninduced | 4.757 |
| SRR8749031 | Uninduced | 1.742 |
| SRR8749032 | Uninduced | 0.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.877 |
| SRR8400027 | Control - Root | 8.934 |