Gene detail

Gene detail information of Glyur003888s00041507.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15690.1	1.00E-93	Inorganic H pyrophosphatase family protein
NR	XP_003609464.1	3.18E-120	Vacuolar proton-inorganic pyrophosphatase [Medicago truncatula]
COG	YP_001840784.1	7.00E-39	membrane-bound proton-translocating pyrophosphatase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Swissprot	tr\|P21616\|AVP_VIGRR	4.00E-117	Pyrophosphate-energized vacuolar membrane proton pump
trEMBL	tr\|B6DXD7\|B6DXD7_MEDTR	4.00E-120	Vacuolar-type H-pyrophosphatase {ECO:0000313\|EMBL:ACI22377.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03888	3654	4917	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01507	ppa	EC:3.6.1.1	Oxidative phosphorylation	map00190

Gene Ontology

biological_process
GO:0015992 proton transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0004427 inorganic diphosphatase activity

GO:0009678 hydrogen-translocating pyrophosphatase activity

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003888s00041507.1	PF03030.11	H_PPase	19	208	3.20E-59

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	9.667
SRR1783600	control	9.571
SRR1783602	moderate drought stress	9.316
SRR1811619	moderate drought stress	9.605

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.023
DRR006520	Root Summer glycyrrhizin high producing strain	6.610
DRR006521	Root Winter glycyrrhizin high producing strain	4.896
DRR006522	Root Winter glycyrrhizin high producing strain	4.960
DRR006523	Root Summer glycyrrhizin low producing strain	9.092
DRR006524	Root Summer glycyrrhizin low producing strain	7.748
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.144
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.713

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.191
SRR2868004	Drought Stress (root)	10.405
SRR2967015	Control (root)	12.527

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.060
SRR9715740	Leaf	5.278
SRR9715741	Leaf	4.369
SRR9715739	Root	19.574
SRR9715742	Root	13.568
SRR9715743	Root	16.128

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.544
SRR8749028	MeJA induced 9h	1.434
SRR8749029	MeJA induced 9h	0.398
SRR8749030	Uninduced	0.469
SRR8749031	Uninduced	0.134
SRR8749032	Uninduced	0.311

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.219
SRR8400027	Control - Root	14.150