Gene detail information of Glyur003885s00043052 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G05642.1 | 3.00E-14 | Nucleic acid-binding, OB-fold-like protein |
| NR | XP_003605674.1 | 1.55E-48 | hypothetical protein MTR_4g036240 [Medicago truncatula] |
| trEMBL | tr|A0A072UJR0|A0A072UJR0_MEDTR | 9.00E-49 | Replication factor-A carboxy-terminal domain protein {ECO:0000313|EMBL:KEH29318.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03885 | 760 | 2385 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003885s00043052.1 | PF08646.5 | Rep_fac-A_C | 40 | 148 | 1.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.007 |
| SRR1783602 | moderate drought stress | 2.185 |
| SRR1811619 | moderate drought stress | 2.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.384 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.457 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.240 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.326 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.413 |
| SRR2967015 | Control (root) | 0.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.592 |
| SRR9715740 | Leaf | 3.957 |
| SRR9715741 | Leaf | 3.449 |
| SRR9715739 | Root | 0.013 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 127.057 |
| SRR8749028 | MeJA induced 9h | 173.057 |
| SRR8749029 | MeJA induced 9h | 97.958 |
| SRR8749030 | Uninduced | 81.595 |
| SRR8749031 | Uninduced | 33.376 |
| SRR8749032 | Uninduced | 42.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.115 |
| SRR8400027 | Control - Root | 0.244 |