Gene detail

Gene detail information of Glyur003873s00040416

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19850.1	3.00E-139	alpha/beta-Hydrolases superfamily protein
NR	XP_003614614.1	0	Haloalkane dehalogenase [Medicago truncatula]
COG	YP_001517202.1	5.00E-112	alpha/beta hydrolase fold protein [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q9FFZ1\|PPH_ARATH	1.00E-24	Pheophytinase, chloroplastic (Precursor)
trEMBL	tr\|G7K0K3\|G7K0K3_MEDTR	0	Alpha/beta fold hydrolase {ECO:0000313\|EMBL:AES97572.1}

Sequence

Transcript Sequence

>Glyur003873s00040416.1
CTGAGAACTGATATAGGAGGAACCGAAGATGAAGAACCTTTGCTACTTATTATTAGTATGGCATTGGCATCGGCGACTACCACTCTCACTGTCCCCCANCGTCGTTCAACACCGTTGTCGTACTCCAAAATCAATTTTCGGCAACCTAATCGGGTTATCGCATTTTCTACTTTCAAAAAACAATCTGTCTATTCGAAATTAAACAACCAAATTGCAGAGCTCCAGGTTCAAACTAGCATATGGAATTGGAGGGGTTACACTATCCGCTATCAGTATTCTGGAAACAATGGCCCTGCACTAGTTTTAGTGCACGGTTTCGGAGCTAACAGTGACCACTGGAGGAAAAATATTTCAGCTCTAGCAAAATTCCATAGGGTATACNCTATTGATCTTATTGGATATGGATATTCAGATAAACCGAATCCCCGTCAAATTGGAGATGATTCCTTTTACACTTTTGACACATGGGCCGCCCAATTAAATGAATTTTGTGTTGATGTCATTAAGGATGAAGCATTCTTTATATGCAATTCTATTGGAGGGGTTGTTGGTCTTCAGGCAGCTATATTAGCACCACAAATTTGTCAGGGCATTGTCCTTCTGAATATATCTCTGCGTATGCTTCATATAAAGAAGCAGCCTTGGTATGGAAAACCTTTCATCAAATCATTCCAGAGACTCCTTAGGGATACTGCTGTAGGAAAATTCTTCTTTAAAACTATTGCAACGAAAGAATCTGTGAGGAACATTCTTTGTCAGTGTTATCATGACACTTCCAAGGTGACNGATGAATTAGTAAATATCATCCTTAGTCCAGGACTGGAACCTGGAGCTGCAGAGGTCTTTCTTGAGTTTATTTGTTACTCAGATGGCCCTCTTCCAGAGGAACTACTACCCCAAGTAAAGTGTCCAGTTTTGATAGCATGGGGTGACAAAGATCCTTGGGAACCAATTGACATTGGAAGAAATTACAGAAACTTTGATTCAGTAGAAGACTTCATTGTCCTTCCAAATGTTGGACATTGCCCCCAGGATGAAGCACCTCATCTTGTGAACCCACTTGTTGAGTCATTTGTGGCACGCCATGCTAATTCTTCATCTAGTACCTAAACAATTAATTGATTCCTGTGTAAGTCAATTTGTTGATGCTGCTCGGCACATTGAAATTGTGTACATTTCTCTATCTGCTTCCATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03873	10266	15866	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003873s00040416.1	PF12697.2	Abhydrolase_6	81	333	2.50E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.321
SRR1783600	control	2.319
SRR1783602	moderate drought stress	1.553
SRR1811619	moderate drought stress	1.619

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.154
DRR006520	Root Summer glycyrrhizin high producing strain	1.089
DRR006521	Root Winter glycyrrhizin high producing strain	1.608
DRR006522	Root Winter glycyrrhizin high producing strain	1.613
DRR006523	Root Summer glycyrrhizin low producing strain	1.201
DRR006524	Root Summer glycyrrhizin low producing strain	1.295
DRR006525	Leaf Summer glycyrrhizin high producing strain	50.349
DRR006526	Leaf Summer glycyrrhizin high producing strain	50.115

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.508
SRR2868004	Drought Stress (root)	3.485
SRR2967015	Control (root)	1.658

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.454
SRR9715740	Leaf	88.094
SRR9715741	Leaf	32.878
SRR9715739	Root	0.561
SRR9715742	Root	0.892
SRR9715743	Root	1.121

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.416
SRR8749028	MeJA induced 9h	0.148
SRR8749029	MeJA induced 9h	0.175
SRR8749030	Uninduced	0.051
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.715
SRR8400027	Control - Root	4.023