Gene detail

Gene detail information of Glyur003869s00041012

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27190.1	1.00E-60	NB-ARC domain-containing disease resistance protein
NR	XP_003624851.1	0	Rpp4 candidate [Medicago truncatula]
COG	YP_001522729.1	2.00E-11	WD-containing repeat protein [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q9T048\|DRL27_ARATH	3.00E-69	Disease resistance protein At4g27190
trEMBL	tr\|G7L3T5\|G7L3T5_MEDTR	0	NBS-LRR type disease resistance protein {ECO:0000313\|EMBL:AES81069.2}

Sequence

Transcript Sequence

>Glyur003869s00041012.1
ATGGAAATTGCTACCGGATTGGCAAGCGGAGCCGTCTCAAAAGGTGGAGAATTAGCAGTGGACTCTGCCGTGAAGCAATTCAAATATCTCATCAGCCGGAAAAAAATTCTGGCCAATATGGACGAAGAACTTACGAATCTAAAAGGTGTGAAACAAGCAATGCAAAGCAGGGTGGACACAGAAAGGGAGAAAGGATATGAAATTTTCCCTGACGTGCAAGACTGGCTCTCCTGCGTGGCAAATGTTGAAGAAGAGTTACAAAGTTTCTATGGTAATGAAGTTAACAAGAGCAAGAAATGCTTTGGTGGGTTGTGTCCAGATTTGGCATTTAATTACTCACTGGGCAAGCGAGCCACCGAAAAAATAGAACTTATTAAGAGATTGAAGGATGAGGGAGACAAATTTCGGGCCATGCCCATAATATCCAGAAAAGCTTCACCAACACTTGGGTCTACCTTCACAGAAAAGATCAAGGGCTTGGAGTCTAGAAACAAAAAAATGACAGAGGTCATAGAGAAACTGAAAGATGATAAGCTCAAAAGGATTAGCATATGTGGGATGGGTGGAGTGGGAAAAACCACACTGGTGAAAGAACTGATCAAAACTGTAGAAAAGAGTAAGCTATTCCATAAGGTTGCAATGGCAGCGGTATCCCAAAATCCAGATTACGAGAAGATCCGAGCCCAAATTGCTGATTGTCTAGGCTTGGACTTGAAAAGTCAGAGTCCAGAAGGAAGAGGCAGGGAGTTACTTCAGAGGTTGAAGGAAATTGATGTCCTAGTAGTGTTGGACGATGTGTGGGATGAGCTTAACTTTGAGTTGATAGGACTTCCATCTCAAGATGACCAGAAGGGTACCAAAATATTGTTCACATCACGAAATGAGAAAGTGTGCCAAAAGATGGGAAGCCAGGCAAATTTTAAAGTGTCCGTGTTGTTGGAGGACGAAGCTTGGTGTCTATTTCATGAGATGGCAGGAGATGTTGTAGATAAACACGATATTAATCCAATAGCAAGAGAGGTTGCAAAGGAATGTGGTGGCTTGCCCCTTGCAATTGTTACAGTTGGAAGAGCACTAGGCAACGCAGAAATGCCTGCATGGAAGCATGCACTCGAACAATTAAAAAATTCTCAGCCATCTTCCTTCTCAGATGTGCAGAAATTTGTGTACTCCCGCATTGAGCTTAGTTTCAATTTTCTGGGTAGCAAAGAACACAAGTCCTTCCTTATGCTTTGTGGCTTGTTCCCAGAAGACTTTGACATTCCTGTTGAAAGTCTATTGCGTCATGGGGTGGGCTTGGGATTGTTCAAAGCCGTGGGTACTGCAAGAAATCAAGTGCATACTTTGGTGGGTGAACTGAAGAGATGTTTCTTATTGTTGGACAGCGATGTTCCAGGGTGTGTGAAGATGCACGATGTTGTACGTGATGTTGCCATATCAGTTGCAAAGGCAGAGCATGGGTTTATGGTGCAACATGGCATTAAGAGTCTAGAAGAAGAGAACTTGAATGACATCAATGCAATATCACTCATCCTGGATGACACAAAGGAGTTAGAAAACTGCTTAGAGTGTCCAAAACTTCAACTACTACAAGTAATGTCAAAAAGCGAGGAACCAAATCAGTTGCTTGAACATTTCTTTCAAGGTATGTGTGCACTCAAAGTTTTATCTATGCAAAATTTATGCATTCCAAAACTTCCATCTCTGTCCAAAGCCTCAGTCCACCTTCATACATTGCAAGTAGAAGGTTGTGATGTTGGAGATATATCTGCCATCGGAAAGGAGCTGAAAAAACTAGAAATCCTAAGTTTTGCCAACTCAAACATTAAAAAGCTTCCTGATGAAATTGGGCAACTGGCGTTTCTAAGATTATTGGATTTGACAGGATGTGATGATCTTAACTTTGTTTCTGTTGATGTCTTAGCAAGGTTGTCTCGATTGGAAGAGCTTTATTTCAAGATAGCAAATTTTCCTTGGATGTTAAACAAAGATGTTCTCAAAGAGTTAATAAATCTTTCTCAACGGCTGAAGGTTCTTGAGATCAAAGTAGGGAAGCTAGAAATTTTACCCGACAATTTGACTTTTGAAAAACAAGAAAGATTTTGGGTTTATGTGGGTCCTTATGCGTCATATGATCGCTGTGGATATTTGGAGTCAAATGTATTACAACTAAGAGCTGTACATTACAACTCTATTAAGGGGAGTTTGATGACCATGCAATTGGTTAAGAAATGTGAAGTTCTTGTATTAGAGAAAGTGAAGGACTTGAAAAATGTCATCTACGAATTAGATGACAGTGGACTCCAATGCATGAAAGATCTAAGGATTGATTCTTGCCCCAATCTTGAGCATGTCATAGATTGGAGTGCTCCATGTTGTCCCTTCCCACTCATCAAGTCATTGTCTCTAACAAATCTTGCCCTTTTAAGGGAAATACTCCATGCATCTAGTCACCATGAAATCGAGAAATCAATGATCGGATTCTCAAATTTAGAGAAATTAAAGTTGAAAAAGCTCCCAAATTTGAGTTGCTTCGATAATGCTATTGATTTGAATGAGACCCATCATCCAATTCATGATCAGGGATTGAGTTCTATCAAATTAACTGATTCAACAAATATTGAGGATGGTGAAATATTATCTAGTTCACATTCAAAACCAACTGATTGTGGACCCTTGTTTTCATCTAATTGGATGAAACAATTCCCAAAATTGGAAACAATATCTTTAGAAAAATGTCATTCCTTAGAGATGGTGTTTGACTTGGAAGGATATTCAGAATCTAATGGTCATGCACTAGCTTTGCTGTTTCCTCAACTAAGAGAAATCGAGATATCAGACCTCGATAAACTATCATATGTGTGGGGGAATGTTCCAGTTTGTGTTCAAGGCTTTCACAATTTGAGAACTCTGACAATCTCAAATTGTGACTCTTTAAAATATGTGTTTACTTCTGACATTGCTAGAGCAATGTTGAATCTTGAGGAACTGAAAGTAACATCTTGTGCGTCGATTGACAATCTGGTTTGGAGTGGGCCTGTTAATGAAGAGGACGACAATAAAGGGCATGAGACAAATATTGTGTTCCATAAACTATACCATTTATCACTTTCAGGACTTCCAAGGCTTGTGAATATAATTCGTTCAAATTCTCTCAAGTTAAAATGTCCATCCTTGAGGCAATTTGAGATTGATGATTGTCCTGTGTTGGAGATATCCTTATCACCAACCCATATACATACAAACCAAGACATGTACAATCACAGTGCCACATCTCCTGCAAACACAAAAGATATTGGATCTCGCAGTTTTAAAGAAAACAACTCAAGGTCGTCTCTTGGATGTCTACCCAAATTTATTCGCCAAGGAAACACAAATAAGAGAAGCAATGAG

Protein Sequence

>Glyur003869s00041012.1
MEIATGLASGAVSKGGELAVDSAVKQFKYLISRKKILANMDEELTNLKGVKQAMQSRVDTEREKGYEIFPDVQDWLSCVANVEEELQSFYGNEVNKSKKCFGGLCPDLAFNYSLGKRATEKIELIKRLKDEGDKFRAMPIISRKASPTLGSTFTEKIKGLESRNKKMTEVIEKLKDDKLKRISICGMGGVGKTTLVKELIKTVEKSKLFHKVAMAAVSQNPDYEKIRAQIADCLGLDLKSQSPEGRGRELLQRLKEIDVLVVLDDVWDELNFELIGLPSQDDQKGTKILFTSRNEKVCQKMGSQANFKVSVLLEDEAWCLFHEMAGDVVDKHDINPIAREVAKECGGLPLAIVTVGRALGNAEMPAWKHALEQLKNSQPSSFSDVQKFVYSRIELSFNFLGSKEHKSFLMLCGLFPEDFDIPVESLLRHGVGLGLFKAVGTARNQVHTLVGELKRCFLLLDSDVPGCVKMHDVVRDVAISVAKAEHGFMVQHGIKSLEEENLNDINAISLILDDTKELENCLECPKLQLLQVMSKSEEPNQLLEHFFQGMCALKVLSMQNLCIPKLPSLSKASVHLHTLQVEGCDVGDISAIGKELKKLEILSFANSNIKKLPDEIGQLAFLRLLDLTGCDDLNFVSVDVLARLSRLEELYFKIANFPWMLNKDVLKELINLSQRLKVLEIKVGKLEILPDNLTFEKQERFWVYVGPYASYDRCGYLESNVLQLRAVHYNSIKGSLMTMQLVKKCEVLVLEKVKDLKNVIYELDDSGLQCMKDLRIDSCPNLEHVIDWSAPCCPFPLIKSLSLTNLALLREILHASSHHEIEKSMIGFSNLEKLKLKKLPNLSCFDNAIDLNETHHPIHDQGLSSIKLTDSTNIEDGEILSSSHSKPTDCGPLFSSNWMKQFPKLETISLEKCHSLEMVFDLEGYSESNGHALALLFPQLREIEISDLDKLSYVWGNVPVCVQGFHNLRTLTISNCDSLKYVFTSDIARAMLNLEELKVTSCASIDNLVWSGPVNEEDDNKGHETNIVFHKLYHLSLSGLPRLVNIIRSNSLKLKCPSLRQFEIDDCPVLEISLSPTHIHTNQDMYNHSATSPANTKDIGSRSFKENNSRSSLGCLPKFIRQGNTNKRSNE

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03869	129	4259	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003869s00041012.1	PF00931.17	NB-ARC	164	428	1.20E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.016
SRR1783600	control	0.011
SRR1783602	moderate drought stress	0.104
SRR1811619	moderate drought stress	0.135

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.080
DRR006520	Root Summer glycyrrhizin high producing strain	0.063
DRR006521	Root Winter glycyrrhizin high producing strain	0.164
DRR006522	Root Winter glycyrrhizin high producing strain	0.208
DRR006523	Root Summer glycyrrhizin low producing strain	2.254
DRR006524	Root Summer glycyrrhizin low producing strain	2.402
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.274
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.245

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.152
SRR2868004	Drought Stress (root)	10.746
SRR2967015	Control (root)	13.632

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.593
SRR9715740	Leaf	0.055
SRR9715741	Leaf	2.627
SRR9715739	Root	0.000
SRR9715742	Root	1.065
SRR9715743	Root	0.897

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.376
SRR8749028	MeJA induced 9h	21.790
SRR8749029	MeJA induced 9h	6.868
SRR8749030	Uninduced	6.470
SRR8749031	Uninduced	34.151
SRR8749032	Uninduced	8.927

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.338
SRR8400027	Control - Root	0.392