Gene detail

Gene detail information of Glyur003866s00038959.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G65530.1	1.00E-137	Protein kinase superfamily protein
NR	KEH20107.1	0	receptor-like cytosolic Serine/Threonine-kinase [Medicago truncatula]
COG	YP_007779934.1	5.00E-23	Serine/threonine protein kinase [Roseburia intestinalis XB6B4]
Swissprot	tr\|Q8H1D6\|RBK1_ARATH	1.00E-164	Receptor-like cytosolic serine/threonine-protein kinase RBK1
trEMBL	tr\|A0A072TRR5\|A0A072TRR5_MEDTR	0	Receptor-like cytosolic Serine/Threonine-kinase {ECO:0000313\|EMBL:KEH20107.1}

Sequence

Transcript Sequence

>Glyur003866s00038959.1
ATGGAGAGAATAGAGAGATGGAGGGAAGAGAGAAGGAAAAGAAACACGAAAGTGGAATTGACGACGGGTGGTAATAATAATAATAGGATCAGGGAGTTTGCTGCATGCGACGAAGACGTTTTGGGTTCGCCGTCGCCGAGGGGTGTGTTTGAGGTTCCGGTTTTAGGGACGGACTCGGATAGTACAGGGAGCAGCAACTACATGATGACACAGCATGGGAGAGAAGCTGCAGGGCACGTGCAGCAGTGGAGGGCAATGATTGATGCGCTNAGGTTCAAGTCGGTGAGGAGATTCTCGACCATTCCTCTGCTTGCGGCTAGCTATGAGATCTCTCGGAGGAGCNTGAGGAACAAGCTGGCTCGTATTCGGAACGATGATGATGATGATGAGGAGAATGATTATGATGGTGCCATTGATCTTGATGGAATCCCTACCAAGCCTTCTTGGAGGAACTTCAAGAACTTGATTGGGAAAGGTGGCCATGCAGAGGTGTACAAAGGACACTTACCTGATGGTGAAGTTGTGGCAGTGAAGAGGCTAATGAAGAATGAGAAGGAAGCTGAGGACAGAGTTGGACCAGCTGGTGACTTCTTGTCTGAGCTTGGGATCATTGCTCATGTCAACCACCCGAATGCAACACGCCTCATTGGGTTTGGGATTGACCAAGGCCTTTACTTTGTTCTGCAATTCGCCTCACATGGCAGCCTTGCCTCTTTGCTCTTTGGTTCTGAATGCTTGGAGTGGAAGATAAGGTTCAAGGTAGCTGTTGGGGTAGCCAAAGGATTGCAGTATCTCCATCACGACTGCCCAAGAAGAATCATTCACAGAGACATCAAAGCCTCAAACATATTACTCAACGACAATGATGAAGCCGAGATTTCAGATTTTGGATTGGCAAAGTGGCTCCCAGATAAGTGGGCCCACCATGTTGTCTTCCCAATTGAAGGAACATTCGGGTATTTGGCTCCAGAGTATTTCATGCATGGACTTGTGGATGAGAAGACTGATGTTTTCGCATTTGGGGTTTTGTTGTTGGAGCTCATAACAGGTCGTCGTGCTGTTGATTCAAATAGCAGGCAAAGTCTTGTAATATGGGTAAAGGAAATAGCAGACCCCAGATTACAAGAGCAATATGATCCCATTGAAATGAAGTGTGCCATGGCAACAGCTTCCATGTGTGTCCACCACATGTCCACTAAACGGCCANACATGGATCAGGTGGTGCAGCTACTGAAGGGTGAAGAGGTGGCTATGGATCTGAATCAAAAATCAATGGCTCCAAGGTCGCTCTTGTTAGATGCATGTGACTTGGAAGATTATACTTGCTCTAATTATTTGAACGACCTCANTCGCCACAAGCAATTAATCATGGAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03866	15219	19264	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.10.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003866s00038959.1	PF00069.20	Pkinase	153	409	5.20E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.284
SRR1783600	control	0.349
SRR1783602	moderate drought stress	0.176
SRR1811619	moderate drought stress	0.198

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.126
DRR006520	Root Summer glycyrrhizin high producing strain	1.047
DRR006521	Root Winter glycyrrhizin high producing strain	0.151
DRR006522	Root Winter glycyrrhizin high producing strain	0.127
DRR006523	Root Summer glycyrrhizin low producing strain	0.881
DRR006524	Root Summer glycyrrhizin low producing strain	0.949
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.518
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.517

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.466
SRR2868004	Drought Stress (root)	1.914
SRR2967015	Control (root)	2.011

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.577
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.458
SRR9715739	Root	0.318
SRR9715742	Root	0.697
SRR9715743	Root	0.600

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.029
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.088
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.039

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.668
SRR8400027	Control - Root	0.611