Gene detail information of Glyur003866s00038956 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65520.1 | 8.00E-23 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004509789.1 | 2.08E-44 | PREDICTED: uncharacterized protein LOC101502186 [Cicer arietinum] |
| trEMBL | tr|A0A072TTC4|A0A072TTC4_MEDTR | 5.00E-43 | TPR domain protein {ECO:0000313|EMBL:KEH20108.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03866 | 3552 | 4162 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003866s00038956.1 | PF00515.23 | TPR_1 | 66 | 97 | 1.40E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.354 |
| SRR1783600 | control | 0.233 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.605 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.429 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.276 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.309 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.818 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.793 |
| SRR2868004 | Drought Stress (root) | 1.709 |
| SRR2967015 | Control (root) | 0.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.792 |
| SRR8749028 | MeJA induced 9h | 0.639 |
| SRR8749029 | MeJA induced 9h | 1.632 |
| SRR8749030 | Uninduced | 0.104 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 1.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.129 |
| SRR8400027 | Control - Root | 0.139 |