Gene detail information of Glyur003856s00038887 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G19330.3 | 9.00E-24 | Protein of unknown function (DUF677) |
| NR | XP_006599418.1 | 1.31E-40 | PREDICTED: UPF0496 protein At3g19330-like [Glycine max] |
| Swissprot | tr|Q9LT84|U496M_ARATH | 2.00E-29 | UPF0496 protein At3g19330 |
| trEMBL | tr|I1MNP6|I1MNP6_SOYBN | 5.00E-41 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G26370.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03856 | 16328 | 18252 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.910 |
| SRR1783600 | control | 16.634 |
| SRR1783602 | moderate drought stress | 17.459 |
| SRR1811619 | moderate drought stress | 17.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.013 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.114 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.022 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.033 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.653 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.426 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.567 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.376 |
| SRR2868004 | Drought Stress (root) | 6.613 |
| SRR2967015 | Control (root) | 6.962 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.546 |
| SRR9715740 | Leaf | 7.363 |
| SRR9715741 | Leaf | 6.353 |
| SRR9715739 | Root | 13.213 |
| SRR9715742 | Root | 6.514 |
| SRR9715743 | Root | 7.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.384 |
| SRR8749028 | MeJA induced 9h | 11.066 |
| SRR8749029 | MeJA induced 9h | 4.430 |
| SRR8749030 | Uninduced | 2.646 |
| SRR8749031 | Uninduced | 3.249 |
| SRR8749032 | Uninduced | 1.638 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.846 |
| SRR8400027 | Control - Root | 11.774 |