Gene detail information of Glyur003854s00039282 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G14890.2 | 3.00E-83 | phosphoesterase |
| NR | XP_003525976.1 | 6.16E-115 | PREDICTED: polynucleotide 3'-phosphatase ZDP-like [Glycine max] |
| Swissprot | tr|Q84JE8|ZDP_ARATH | 7.00E-98 | Polynucleotide 3'-phosphatase ZDP |
| trEMBL | tr|I1KDK7|I1KDK7_SOYBN | 2.00E-115 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G33080.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03854 | 4186 | 13039 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003854s00039282.1 | PF08645.6 | PNK3P | 122 | 275 | 5.30E-46 |
| Glyur003854s00039282.2 | PF08645.6 | PNK3P | 57 | 210 | 2.40E-46 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.570 |
| SRR1783600 | control | 3.828 |
| SRR1783602 | moderate drought stress | 5.043 |
| SRR1811619 | moderate drought stress | 4.966 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.860 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.103 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.876 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.534 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.841 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.917 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.343 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.716 |
| SRR2868004 | Drought Stress (root) | 16.337 |
| SRR2967015 | Control (root) | 16.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.084 |
| SRR9715740 | Leaf | 17.100 |
| SRR9715741 | Leaf | 14.705 |
| SRR9715739 | Root | 2.785 |
| SRR9715742 | Root | 7.786 |
| SRR9715743 | Root | 7.886 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.371 |
| SRR8749028 | MeJA induced 9h | 17.086 |
| SRR8749029 | MeJA induced 9h | 25.988 |
| SRR8749030 | Uninduced | 9.329 |
| SRR8749031 | Uninduced | 5.352 |
| SRR8749032 | Uninduced | 8.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.365 |
| SRR8400027 | Control - Root | 19.274 |