Gene detail information of Glyur003851s00044096 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60990.1 | 8.00E-30 | DEA(D/H)-box RNA helicase family protein |
| NR | XP_003521207.1 | 2.03E-50 | PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like isoform X1 [Glycine max] |
| COG | YP_002762282.1 | 1.00E-19 | ATP-dependent RNA helicase RhlE [Gemmatimonas aurantiaca T-27] |
| Swissprot | tr|Q8GY84|RH10_ARATH | 5.00E-35 | DEAD-box ATP-dependent RNA helicase 10 |
| trEMBL | tr|K7KC67|K7KC67_SOYBN | 8.00E-51 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G01710.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03851 | 89 | 757 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003851s00044096.1 | PF00270.24 | DEAD | 34 | 87 | 1.20E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.274 |
| SRR1783600 | control | 20.333 |
| SRR1783602 | moderate drought stress | 23.025 |
| SRR1811619 | moderate drought stress | 23.253 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.376 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.032 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.082 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.394 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.725 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.075 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.261 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.931 |
| SRR2868004 | Drought Stress (root) | 9.879 |
| SRR2967015 | Control (root) | 8.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.455 |
| SRR9715740 | Leaf | 2.250 |
| SRR9715741 | Leaf | 1.938 |
| SRR9715739 | Root | 0.321 |
| SRR9715742 | Root | 11.359 |
| SRR9715743 | Root | 8.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.754 |
| SRR8749028 | MeJA induced 9h | 10.646 |
| SRR8749029 | MeJA induced 9h | 2.175 |
| SRR8749030 | Uninduced | 2.974 |
| SRR8749031 | Uninduced | 2.514 |
| SRR8749032 | Uninduced | 4.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.727 |
| SRR8400027 | Control - Root | 5.790 |