Gene detail

Gene detail information of Glyur003850s00041572

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G42830.1	2.00E-65	HXXXD-type acyl-transferase family protein
NR	AES73315.2	1.29E-112	HXXXD-type acyl-transferase family protein [Medicago truncatula]
Swissprot	tr\|Q9SND9\|Y3028_ARATH	1.00E-34	Uncharacterized acetyltransferase At3g50280
trEMBL	tr\|G7J6X1\|G7J6X1_MEDTR	5.00E-113	HXXXD-type acyl-transferase family protein {ECO:0000313\|EMBL:AES73315.2}

Sequence

Transcript Sequence

>Glyur003850s00041572.1
ATGTTTCATCAAACCGCTTCACCCCATTCAAGAGTCAAACCAAACCTGCCACTTAACATGCTGGGACCTTTCTATGTTGTCTATGCACTACATCCATCCAGAAGGGCCTCCTATTCAAGAAGCAACAAGAAGCTCAAACACTCACTTTCTCTTGCCCTCTCCCATTTCTACCCACTCTCTGGCCACCTCGTCACCCATCAAACCCAACACCCAGTTCCCTCCTATTCCCTCTTCGTTGAATGCAGTGACAACAATAACCCTGGAGCCAGATTCATCTACGCAACTCTGGACTTGAACGCCACGGTGGAGAAGAGAAGCAACTTGAGGACGGGAGACTTGAAGGACCCACCAATAAATCTTCCCTTCAAACACCACGACGAGTTTATTGGCAGATTTGAATCACCAAAACTCAGAGAGAGACTATTCCACTTTACAGAAGAATCCATTGCAAAACTGAAAGCAAAGGCCAATTTTGAGTGTACTACAACAAAAATCTCTTCTTTTCAGTCCTTTTCGGCACATGTTTGGAGATGCTTAACACGCGCGTGGGGAGTAACACGTGATCAGAAAACCACTTGTAAGCTGGCTATAAACAACAGACCGAGAATGGAACCGCCTCTGCCACAAGGGTATTTTGGGAACTCTGTTGATGTGGTGAGTACTGAAGAAATAACAGCAGGGGAATTACTTGAGAACAATATTGGTGTGCACGTGGCTGTTGCAAACCATGATGACAGAGTTTTGAGGAAGTCTCTGAAAGAGTGGTTACAGTCTCCTATAGTGTACCAATTTGGTCTCCACTTTGACCCCTTCACTGTGATCCTGTCAAGTTCACCGAGGTTCAACATGTATGGGAATGAATTTGGAATGGGGAAACCGGTTGGGGTTCTGAGTGGGTATGCTAACAAATTTGATGGGAATGTCACAGCATACGAGGGATATGAAGGAGGGGGAAGCATGGATTTGGCAATTTCCCTTGCCCCTGATGCAAAGAGGGCGCTTGAAACAGATGAGGAGTTCATGAATACTGTTTCTGTGGCCAATAATCACTCTTACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03850	17998	19462	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003850s00041572.1	PF02458.10	Transferase	26	98	3.30E-07
Glyur003850s00041572.1	PF02458.10	Transferase	141	341	5.10E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.003
SRR1783600	control	4.926
SRR1783602	moderate drought stress	4.172
SRR1811619	moderate drought stress	4.200

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.507
DRR006520	Root Summer glycyrrhizin high producing strain	3.224
DRR006521	Root Winter glycyrrhizin high producing strain	0.960
DRR006522	Root Winter glycyrrhizin high producing strain	0.704
DRR006523	Root Summer glycyrrhizin low producing strain	0.493
DRR006524	Root Summer glycyrrhizin low producing strain	0.556
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.107
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.087

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.032
SRR2868004	Drought Stress (root)	0.017
SRR2967015	Control (root)	0.087

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.978
SRR9715740	Leaf	2.281
SRR9715741	Leaf	2.860
SRR9715739	Root	3.159
SRR9715742	Root	5.010
SRR9715743	Root	3.918

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.099
SRR8749028	MeJA induced 9h	0.370
SRR8749029	MeJA induced 9h	0.194
SRR8749030	Uninduced	0.352
SRR8749031	Uninduced	1.466
SRR8749032	Uninduced	0.407

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.002
SRR8400027	Control - Root	5.902