Gene detail

Gene detail information of Glyur003842s00044180

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45400.1	4.00E-90	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_004492613.1	2.31E-178	PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like isoform X1 [Cicer arietinum]
COG	YP_002015379.1	1.00E-40	NAD-dependent epimerase/dehydratase [Prosthecochloris aestuarii DSM 271]
Swissprot	tr\|Q40316\|VESTR_MEDSA	2.00E-180	Vestitone reductase
trEMBL	tr\|A2Q3W4\|A2Q3W4_MEDTR	5.00E-178	Uncharacterized protein {ECO:0000313\|EMBL:AFK37037.1}

Sequence

Transcript Sequence

>Glyur003842s00044180.1
ACAAAAACAAAAACAAAAACAAAAACAAAAAGAAAGTAAACAAAGCCAAAGTAAGAGTATCCAAATGGCTGAAGGTAAAGGGAGAGTCTGTGTCACTGGAGGTACAGGGTTTCTGGGTTCATGGCTTATCAAGAGACTCCTTGACGATGGTTACACTGTTAATACCACTGTTAGATCTGACCCAGATGTTAGCTACCTCACAAATCTACCTGGTGCACACCAAAAGCTTCAAATCTTCAACGCTGATCTCAGCAATCCAGAAAGTTTTGGTGTTGCAATTGAAGGTTGCGTTGGGGTATTCCATGTTGCCGCACCAATTGATTTTGCAATGAGGGAGCCAGAGGAGACAGTGACCAAAAGAACCGTTGATGGGGCACTTGGAATTCTAAAAGCATGCTTGAATTCAAAGACTGTGAAGAGAGTTGTATACACTTCTAGTGCCTCTGCCACTTACTTCAGTGGCACAGAGAAAGAGGTAATGGATGAGAGTATTTGGAGTGATGTGGATTTTCTTAGAAGGCTGAAGCCACCTGGTTGGTCTTATGCAGTTTCCAAGACCTTAACAGAGAAGGCAGTGCTTGAATTTGGGGAACAACATGGGTTAGAGGTTGTGACTCTATTACCTTCATATGTTGTTGGGCGCTTCCTTTGTCCTAAGCTTCCTGAGTCAGTTGAACAAGTGTTGGTTTTGGTATTAGGCAAAAAGGATCAAATTGGTTTCTCAGGTTTCCATATGGTGCATGTGGATGATGTGGTTAGAGCACATATATTCCTGCTTGAGCATCCTAATCCAAAAGGGAGATATATTTGCTCACCACTCTTTGTACCTATTGAAGAGATTTCTGAACTTCTTTCAGCCAAATACCCAGAATTTCAAATACCAACAGTAGATCTAGAAGAGCAGAAGGAAATCAAAGGTATCAAGTTCTCAAAATTAAACTCGAAGAAACTCATGAATGCTGGTTTTGAGTTCAAGTATAGCCTTGAGGAAATGTTTGACGATGCAATTCAATGTTGCAAGAAAAAGGGCTATCTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03842	16933	19180	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003842s00044180.1	PF01370.16	Epimerase	8	246	3.90E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.699
SRR1783600	control	11.707
SRR1783602	moderate drought stress	9.520
SRR1811619	moderate drought stress	9.101

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.416
DRR006520	Root Summer glycyrrhizin high producing strain	10.571
DRR006521	Root Winter glycyrrhizin high producing strain	17.500
DRR006522	Root Winter glycyrrhizin high producing strain	17.374
DRR006523	Root Summer glycyrrhizin low producing strain	1.042
DRR006524	Root Summer glycyrrhizin low producing strain	0.889
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.009
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.933

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.599
SRR2868004	Drought Stress (root)	4.137
SRR2967015	Control (root)	4.029

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.733
SRR9715740	Leaf	1.210
SRR9715741	Leaf	3.208
SRR9715739	Root	2.262
SRR9715742	Root	3.348
SRR9715743	Root	3.630

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.559
SRR8400027	Control - Root	28.675