Gene detail information of Glyur003838s00044925 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G08920.1 | 1.00E-60 | Rhodanese/Cell cycle control phosphatase superfamily protein |
| NR | KHN35576.1 | 1.77E-125 | hypothetical protein glysoja_044865 [Glycine soja] |
| Swissprot | tr|Q9SR92|STR10_ARATH | 4.00E-77 | Rhodanese-like domain-containing protein 10 |
| trEMBL | tr|I1J7F5|I1J7F5_SOYBN | 7.00E-126 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G30350.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03838 | 14940 | 16459 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003838s00044925.1 | PF00581.15 | Rhodanese | 57 | 180 | 3.10E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.103 |
| SRR1783600 | control | 0.137 |
| SRR1783602 | moderate drought stress | 0.493 |
| SRR1811619 | moderate drought stress | 0.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.270 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.388 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.138 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.135 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.529 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.599 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 41.111 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 41.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.731 |
| SRR2868004 | Drought Stress (root) | 1.685 |
| SRR2967015 | Control (root) | 0.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 71.571 |
| SRR9715740 | Leaf | 117.252 |
| SRR9715741 | Leaf | 58.970 |
| SRR9715739 | Root | 0.300 |
| SRR9715742 | Root | 1.005 |
| SRR9715743 | Root | 0.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.354 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.105 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.837 |
| SRR8400027 | Control - Root | 1.248 |