Gene detail

Gene detail information of Glyur003817s00041938.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G20900.1	1.00E-25	jasmonate-zim-domain protein 12
NR	XP_004488159.1	4.97E-108	PREDICTED: protein TIFY 3B-like [Cicer arietinum]
Swissprot	tr\|Q9C5K8\|TIF3B_ARATH	5.00E-30	Protein TIFY 3B
trEMBL	tr\|A0A097GTY5\|A0A097GTY5_PHALU	8.00E-96	Jasmonate ZIM domain-containing protein {ECO:0000313\|EMBL:AIT38273.1} (Fragment)

Sequence

Transcript Sequence

>Glyur003817s00041938.1
CACATAAGAAACACATGTTGCTTAAAGTAGCCNGCAATGATTGATGGTTGGTCATTACAACTGGGCACAAAAGGGAATCNAAACCAGCTTTCCTCACAAAACCATTGAAATCAAATTCTTCCNACCAAGACTTTTTCAACAAAACTACTATTCCCTTCAAGCATTCTCTTGTGGGGTTTTTCTCCNAACAACAATGGATGGTGTCACTGTCAAGCTCGAAGCAGAGGAACAGGTTATNGCTCTAGAATCTTCTCCTCCTCCTTCTGTGGAGGAACACCTGGTCCAGCACAACATGGGTGGTGATGATGTGTCAACCATGCATCTCTCAGGAAACAGGTCAATGCCAGCATCTGGACTGAATGCAGTTATTCCTAATACAAATCAGCTTACCATCTTCTTTAATGGGAGTGTTTGTATCTATGATGGAATACCTGCAGAAAAGGTGCATGAAATAATGCTCATTGCTGCTGCCGCCGCCTCCAAGTCCACTGAAATGAAGAAGATTGGGACACAATCTCCCCTCCTTTCACCTGTTCCCACAAGGCCTTCTTCGCCACATGGTGCCACTAATAATGTTGCTTCACCGCCGGCACTCTGCTTTGATGCAAAGAGTAGTTCCATCTGCAAGCTGCAAGAATTCCCAATAGCACGCAGACATTCGCTTCAAAGGTTTCTTGAGAAGCGGCGAGACAGGTTGGGGAGCAAAGCCCCTTATCCTTCCTCAACAACAACAAAAGTTGCTGACAACATAGAGAACAACTTATGTGGTGACAATGTGCCAGATTTGGTCTCCTTCAAACGGCAAGAGGAAGAACTTCAGCCAACTATTTCTGCCTCTTGAGAGCACAACTAGTGTTATTTTCTACTTTATGTGGGGTGATAGTGTGGAAGATAATGTGCATGTAGAACTATAGGAACTAATGTAACTGTTATTATTGTGTTTCTGGAGTCATAACTATTGAACCTGAAAATGGTCAAAAAGTGTGACTTGAAAACATGCTTTGTTCTCATATCATCTCATTTTAAACTGTTTTTCCTGTATCTGACTGTCTGTAGACAACTGATAATCTGTTGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03817	5333	8869	-

Gene family

Gene family	subfamily
Transcription Factors Family	Tify

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003817s00041938.1	PF06200.9	tify	110	142	7.30E-16
Glyur003817s00041938.1	PF09425.5	CCT_2	200	225	1.80E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	107.205
SRR1783600	control	108.687
SRR1783602	moderate drought stress	93.553
SRR1811619	moderate drought stress	93.403

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	81.599
DRR006520	Root Summer glycyrrhizin high producing strain	80.631
DRR006521	Root Winter glycyrrhizin high producing strain	11.374
DRR006522	Root Winter glycyrrhizin high producing strain	10.962
DRR006523	Root Summer glycyrrhizin low producing strain	48.950
DRR006524	Root Summer glycyrrhizin low producing strain	49.303
DRR006525	Leaf Summer glycyrrhizin high producing strain	46.668
DRR006526	Leaf Summer glycyrrhizin high producing strain	46.405

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	133.249
SRR2868004	Drought Stress (root)	132.007
SRR2967015	Control (root)	137.229

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	107.954
SRR9715740	Leaf	109.924
SRR9715741	Leaf	82.445
SRR9715739	Root	60.368
SRR9715742	Root	59.007
SRR9715743	Root	54.147

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	48.341
SRR8749028	MeJA induced 9h	19.978
SRR8749029	MeJA induced 9h	43.829
SRR8749030	Uninduced	72.590
SRR8749031	Uninduced	31.217
SRR8749032	Uninduced	75.361

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	89.496
SRR8400027	Control - Root	57.708