Gene detail information of Glyur003817s00041937 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G48350.1 | 5.00E-47 | Ribosomal L18p/L5e family protein |
| NR | KHN41509.1 | 3.24E-63 | 50S ribosomal protein L18, chloroplastic [Glycine soja] |
| COG | YP_004980566.1 | 1.00E-39 | 50S ribosomal protein L18 [Geobacillus thermoleovorans CCB_US3_UF5] |
| Swissprot | tr|Q9SX68|RK18_ARATH | 5.00E-59 | 50S ribosomal protein L18, chloroplastic (Precursor) |
| trEMBL | tr|I1L1X6|I1L1X6_SOYBN | 1.00E-63 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G09110.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03817 | 1340 | 4100 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003817s00041937.1 | PF00861.17 | Ribosomal_L18p | 3 | 103 | 1.80E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.674 |
| SRR1783600 | control | 23.529 |
| SRR1783602 | moderate drought stress | 13.569 |
| SRR1811619 | moderate drought stress | 13.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.023 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.225 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.381 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.465 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.878 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.014 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 157.291 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 164.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.325 |
| SRR2868004 | Drought Stress (root) | 17.350 |
| SRR2967015 | Control (root) | 15.671 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 90.744 |
| SRR9715740 | Leaf | 111.486 |
| SRR9715741 | Leaf | 52.833 |
| SRR9715739 | Root | 16.543 |
| SRR9715742 | Root | 9.414 |
| SRR9715743 | Root | 10.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 49.036 |
| SRR8749028 | MeJA induced 9h | 23.238 |
| SRR8749029 | MeJA induced 9h | 44.154 |
| SRR8749030 | Uninduced | 13.532 |
| SRR8749031 | Uninduced | 6.422 |
| SRR8749032 | Uninduced | 11.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.578 |
| SRR8400027 | Control - Root | 27.853 |