Gene detail information of Glyur003815s00044500 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G14860.1 | 2.00E-32 | nudix hydrolase homolog 18 |
| NR | XP_003525233.1 | 3.42E-52 | PREDICTED: nudix hydrolase 17, mitochondrial-like [Glycine max] |
| COG | YP_005846311.1 | 7.00E-09 | NTP pyrophosphohydrolase-like protein [Ignavibacterium album JCM 16511] |
| Swissprot | tr|Q9LQU5|NUD18_ARATH | 6.00E-40 | Nudix hydrolase 18, mitochondrial (Precursor) |
| trEMBL | tr|I1K5L3|I1K5L3_SOYBN | 1.00E-52 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G34670.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03815 | 1611 | 2644 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003815s00044500.1 | PF00293.23 | NUDIX | 10 | 56 | 8.10E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.238 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.430 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.182 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.003 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.832 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.073 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.218 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.324 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.239 |
| SRR2868004 | Drought Stress (root) | 1.405 |
| SRR2967015 | Control (root) | 5.594 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.753 |
| SRR9715740 | Leaf | 0.254 |
| SRR9715741 | Leaf | 4.063 |
| SRR9715739 | Root | 2.268 |
| SRR9715742 | Root | 15.318 |
| SRR9715743 | Root | 11.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.587 |
| SRR8749028 | MeJA induced 9h | 5.285 |
| SRR8749029 | MeJA induced 9h | 9.822 |
| SRR8749030 | Uninduced | 6.820 |
| SRR8749031 | Uninduced | 3.977 |
| SRR8749032 | Uninduced | 7.735 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.194 |
| SRR8400027 | Control - Root | 1.947 |