Gene detail information of Glyur003807s00042785 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G35860.2 | 7.00E-56 | GTP-binding 2 |
| NR | XP_007151594.1 | 6.49E-71 | hypothetical protein PHAVU_004G060100g [Phaseolus vulgaris] |
| Swissprot | tr|Q38922|RAB1B_ARATH | 5.00E-69 | Ras-related protein RABB1b |
| trEMBL | tr|V7C2J2|V7C2J2_PHAVU | 2.00E-71 | Uncharacterized protein {ECO:0000313|EMBL:ESW23588.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03807 | 775 | 8843 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003807s00042785.1 | PF00071.17 | Ras | 1 | 54 | 4.50E-15 |
| Glyur003807s00042785.1 | PF00071.17 | Ras | 78 | 156 | 3.60E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.268 |
| SRR1783600 | control | 8.130 |
| SRR1783602 | moderate drought stress | 11.123 |
| SRR1811619 | moderate drought stress | 11.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.546 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.093 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 67.882 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 64.298 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.558 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 27.679 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.274 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.117 |
| SRR2868004 | Drought Stress (root) | 15.547 |
| SRR2967015 | Control (root) | 17.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.689 |
| SRR9715740 | Leaf | 10.030 |
| SRR9715741 | Leaf | 15.243 |
| SRR9715739 | Root | 7.586 |
| SRR9715742 | Root | 11.389 |
| SRR9715743 | Root | 11.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 42.462 |
| SRR8749028 | MeJA induced 9h | 24.196 |
| SRR8749029 | MeJA induced 9h | 50.561 |
| SRR8749030 | Uninduced | 50.397 |
| SRR8749031 | Uninduced | 44.250 |
| SRR8749032 | Uninduced | 34.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.509 |
| SRR8400027 | Control - Root | 10.815 |